RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 BICRALQ6AI39 1079 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 OGFOD2Q6N063 350 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 ARHGAP11AQ6P4F7 1023 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 NUP54Q7Z3B4 507 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 FJX1Q86VR8 437 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 OR5M3Q8NGP4 307 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 DIO2Q92813 273 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 COQ8BQ96D53 544 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 TMEM41AQ96HV5 264 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 RILPQ96NA2 401 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 LMF2Q9BU23 707 aaKnown RBP14.79□□□□□ -0.04
TRIM28-213ENST00000598355 DOHHQ9BU89 302 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 VIPAS39Q9H9C1 493 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 SIRT3Q9NTG7 399 aaPredicted RBP14.79□□□□□ -0.04
TRIM28-213ENST00000598355 THAP1Q9NVV9 213 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 NOP53Q9NZM5 478 aaKnown RBP14.79□□□□□ -0.04
TRIM28-213ENST00000598355 TINAGQ9UJW2 476 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 LIPGQ9Y5X9 500 aa14.79□□□□□ -0.04
TRIM28-213ENST00000598355 MED12Q93074 2177 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 PCNX3Q9H6A9 2034 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 A0A1B0GTH9 108 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 ADAM10O14672 748 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 SUSD5O60279 629 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 DDX5P17844 614 aaKnown RBP14.78□□□□□ -0.04
TRIM28-213ENST00000598355 PRPS1L1P21108 318 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 CDK9P50750 372 aaKnown RBP14.78□□□□□ -0.04
TRIM28-213ENST00000598355 ZNF155Q12901 538 aaPredicted RBP14.78□□□□□ -0.04
TRIM28-213ENST00000598355 HSPB3Q12988 150 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 TTMPQ5BVD1 217 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 DESI1Q6ICB0 168 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 TRILQ7L0X0 811 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 OR7A2PQ8NGA2 310 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 FAM57AQ8TBR7 257 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 TMBIM1Q969X1 311 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 GIMAP5Q96F15 307 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 ATP6V1G3Q96LB4 118 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 NODALQ96S42 347 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 AKTIPQ9H8T0 292 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 ACKR4Q9NPB9 350 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 NKIRAS1Q9NYS0 192 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 SH3BP4Q9P0V3 963 aa14.78□□□□□ -0.04
TRIM28-213ENST00000598355 TRGV8A0A0C4DH27 118 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 OR14I1A6ND48 311 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 TTC36A6NLP5 189 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 AQP7O14520 342 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 SDHDO14521 159 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 ANKRD28O15084 1053 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 ZG16O60844 167 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 CELA3AP09093 270 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 LAMP1P11279 417 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 G6PDP11413 515 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 ABOP16442 354 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 ENDOUP21128 410 aaKnown RBP14.77□□□□□ -0.05
TRIM28-213ENST00000598355 PTGS2P35354 604 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 PNLIPRP2P54317 469 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 CLDN8P56748 225 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 CYP27C1Q4G0S4 372 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 LARP4Q71RC2 724 aaKnown RBP eCLIP14.77□□□□□ -0.058e-10■■■□□ 18.9
TRIM28-213ENST00000598355 DOLPP1Q86YN1 238 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 TRIM42Q8IWZ5 723 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 KRTCAP2Q8N6L1 136 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 NATD1Q8N6N6 113 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 MGARPQ8TDB4 240 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 PHF10Q8WUB8 498 aaKnown RBP14.77□□□□□ -0.05
TRIM28-213ENST00000598355 CCDC120Q96HB5 630 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 COL21A1Q96P44 957 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 MS4A4EQ96PG1 132 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 DMRTA2Q96SC8 542 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 PAIP2Q9BPZ3 127 aaKnown RBP14.77□□□□□ -0.05
TRIM28-213ENST00000598355 OSBPL11Q9BXB4 747 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 NUF2Q9BZD4 464 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 PNPOQ9NVS9 261 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 ARGLU1Q9NWB6 273 aaPredicted RBP14.77□□□□□ -0.05
TRIM28-213ENST00000598355 EIF3LQ9Y262 564 aaKnown RBP14.77□□□□□ -0.05
TRIM28-213ENST00000598355 NBPF19A0A087WUL8 3843 aa14.77□□□□□ -0.05
TRIM28-213ENST00000598355 PRAMEF25A6NGN4 478 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 SNPHO15079 494 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 ZNHIT1O43257 154 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 CDC40O60508 579 aaKnown RBP eCLIP14.76□□□□□ -0.05
TRIM28-213ENST00000598355 HCN1O60741 890 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 CLDN1O95832 211 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 ELAVL4P26378 380 aaKnown RBP14.76□□□□□ -0.05
TRIM28-213ENST00000598355 DIO3P55073 304 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 MANFP55145 182 aaKnown RBP14.76□□□□□ -0.05
TRIM28-213ENST00000598355 EMC4Q5J8M3 183 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 ATG16L1Q676U5 607 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 SLC30A6Q6NXT4 461 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 MTFR2Q6P444 385 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 PAOXQ6QHF9 649 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 HDXQ7Z353 690 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 CD163Q86VB7 1156 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 SLC44A2Q8IWA5 706 aaPredicted RBP14.76□□□□□ -0.05
TRIM28-213ENST00000598355 OR4N2Q8NGD1 307 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 ITLN2Q8WWU7 325 aaPredicted RBP14.76□□□□□ -0.05
TRIM28-213ENST00000598355 MAELQ96JY0 434 aaKnown RBP14.76□□□□□ -0.05
TRIM28-213ENST00000598355 PHF12Q96QT6 1004 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 BHLHE41Q9C0J9 482 aaPredicted RBP14.76□□□□□ -0.05
TRIM28-213ENST00000598355 DEFB127Q9H1M4 99 aa14.76□□□□□ -0.05
TRIM28-213ENST00000598355 ATAD3AQ9NVI7 634 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms