RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PORP16435 677 aaPredicted RBP9.1□□□□□ -0.95
TRIM28-210ENST00000597618 DRD5P21918 477 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 CDKN1AP38936 164 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 PPICP45877 212 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 DSCR4P56555 118 aaPredicted RBP9.1□□□□□ -0.95
TRIM28-210ENST00000597618 RPS3AP61247 264 aaKnown RBP9.1□□□□□ -0.95
TRIM28-210ENST00000597618 PSPHP78330 225 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 MAP4K2Q12851 820 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 EFR3AQ14156 821 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 PRICKLE4Q2TBC4 344 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 RAET1LQ5VY80 246 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 OR5M10Q6IEU7 315 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 STAC2Q6ZMT1 411 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 ZNF662Q6ZS27 426 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 GFM2Q969S9 779 aaKnown RBP9.1□□□□□ -0.95
TRIM28-210ENST00000597618 TMBIM1Q969X1 311 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 SLC35A4Q96G79 324 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 MS4A14Q96JA4 679 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 HS6ST2Q96MM7 605 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 TACO1Q9BSH4 297 aaKnown RBP9.1□□□□□ -0.95
TRIM28-210ENST00000597618 MCMBPQ9BTE3 642 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 BEX2Q9BXY8 128 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 STMN4Q9H169 189 aaPredicted RBP9.1□□□□□ -0.95
TRIM28-210ENST00000597618 CAB39LQ9H9S4 337 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 LRTM1Q9HBL6 345 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 MOCS1Q9NZB8 636 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 PRODH2Q9UF12 536 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 LIPT1Q9Y234 373 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 PLLPQ9Y342 182 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 RNF115Q9Y4L5 304 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 MAGED1Q9Y5V3 778 aaPredicted RBP9.1□□□□□ -0.95
TRIM28-210ENST00000597618 TEX264Q9Y6I9 313 aa9.1□□□□□ -0.95
TRIM28-210ENST00000597618 H0YC42 278 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 CLOCKO15516 846 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 PHGDHO43175 533 aaKnown RBP9.09□□□□□ -0.95
TRIM28-210ENST00000597618 UGDHO60701 494 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 REM1O75628 298 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 SEMA3DO95025 777 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 PLGP00747 810 aaPredicted RBP9.09□□□□□ -0.95
TRIM28-210ENST00000597618 GBAP04062 536 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 ATP1B1P05026 303 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 THBS1P07996 1170 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 DANCRP0C864 163 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 STMN1P16949 149 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 DEKP35659 375 aaKnown RBP9.09□□□□□ -0.95
TRIM28-210ENST00000597618 KRT20P35900 424 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 SUCLG1P53597 346 aaKnown RBP9.09□□□□□ -0.95
TRIM28-210ENST00000597618 TPD52P55327 224 aaPredicted RBP9.09□□□□□ -0.95
TRIM28-210ENST00000597618 CLDN15P56746 228 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 MGAT2Q10469 447 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 GANABQ14697 944 aaKnown RBP9.09□□□□□ -0.95
TRIM28-210ENST00000597618 SLMAPQ14BN4 828 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 MORF4L2Q15014 288 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 EXOSC7Q15024 291 aaKnown RBP9.09□□□□□ -0.95
TRIM28-210ENST00000597618 LIPJQ5W064 366 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 FAM111BQ6SJ93 734 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 BEND4Q6ZU67 534 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.09□□□□□ -0.95
TRIM28-210ENST00000597618 METTL25Q8N6Q8 603 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 OR52R1Q8NGF1 315 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 RAB3IL1Q8TBN0 382 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 STAG3L4Q8TBR4 150 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 SMAP2Q8WU79 429 aaPredicted RBP9.09□□□□□ -0.95
TRIM28-210ENST00000597618 PBKQ96KB5 322 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 ADOQ96SZ5 270 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 KCNK17Q96T54 332 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 RHNO1Q9BSD3 238 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 PLSCR4Q9NRQ2 329 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 MAT2BQ9NZL9 334 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 GPR52Q9Y2T5 361 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 ANGPTL3Q9Y5C1 460 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 SNX8Q9Y5X2 465 aa9.09□□□□□ -0.95
TRIM28-210ENST00000597618 MEGF8Q7Z7M0 2845 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 A0A1W2PP18 115 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 SUPT3HB4E1H0 165 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 H3BML4 177 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 FOXE1O00358 373 aaPredicted RBP9.08□□□□□ -0.96
TRIM28-210ENST00000597618 WIPF1O43516 503 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 DLX3O60479 287 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 KERAO60938 352 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 SS18L1O75177 396 aaPredicted RBP9.08□□□□□ -0.96
TRIM28-210ENST00000597618 SUPT3HO75486 399 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 AQP8O94778 261 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 CBX7O95931 251 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 FESP07332 822 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 CD3EP07766 207 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 HK1P19367 917 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 CSNK2A2P19784 350 aaPredicted RBP9.08□□□□□ -0.96
TRIM28-210ENST00000597618 PSMB1P20618 241 aaKnown RBP9.08□□□□□ -0.96
TRIM28-210ENST00000597618 IL12BP29460 328 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 CASP9P55211 416 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 CTBP2P56545 445 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 ARL4CP56559 192 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 CLDN20P56880 219 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 MRPS22P82650 360 aaKnown RBP9.08□□□□□ -0.96
TRIM28-210ENST00000597618 CPSF6Q16630 551 aaKnown RBP eCLIP9.08□□□□□ -0.96
TRIM28-210ENST00000597618 TMEM249Q2WGJ8 235 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 LARP4Q71RC2 724 aaKnown RBP eCLIP9.08□□□□□ -0.96
TRIM28-210ENST00000597618 STK32CQ86UX6 486 aa9.08□□□□□ -0.96
TRIM28-210ENST00000597618 ANKMY2Q8IV38 441 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms