RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 FRMPD3Q5JV73 1810 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 A0A1W2PPK0 400 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 ZC3H12DA2A288 527 aaKnown RBP14.38□□□□□ -0.11
UPF1-204ENST00000596842 PRAMEF27A3QJZ7 478 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 SLC2A10O95528 541 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 SRPRAP08240 638 aaKnown RBP14.38□□□□□ -0.11
UPF1-204ENST00000596842 GNSP15586 552 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 TM4SF4P48230 202 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 CLDN2P57739 230 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 SRP54P61011 504 aaKnown RBP14.38□□□□□ -0.11
UPF1-204ENST00000596842 PIP5KL1Q5T9C9 394 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 MEDAGQ5VYS4 303 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 SFTPA1Q8IWL2 248 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 ANKK1Q8NFD2 765 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 OR51G2Q8NGK0 314 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 SNX18Q96RF0 628 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 MCCC2Q9HCC0 563 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 MCUBQ9NWR8 336 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 A4GNTQ9UNA3 340 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 KCNE3Q9Y6H6 103 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 TRAV6A0A075B6T7 132 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 TEX46H3BTG2 121 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 MTRF1O75570 445 aaKnown RBP14.38□□□□□ -0.11
UPF1-204ENST00000596842 LALBAP00709 142 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 HMGN2P05204 90 aaKnown RBP14.38□□□□□ -0.11
UPF1-204ENST00000596842 HOXB3P14651 431 aaPredicted RBP14.38□□□□□ -0.11
UPF1-204ENST00000596842 PXNP49023 591 aaPredicted RBP14.38□□□□□ -0.11
UPF1-204ENST00000596842 SMSP52788 366 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 C21orf58P58505 322 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 SNRPGP62308 76 aaKnown RBP14.38□□□□□ -0.11
UPF1-204ENST00000596842 MTFR2Q6P444 385 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 AMZ2Q86W34 360 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 VRK2Q86Y07 508 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 METTL2AQ96IZ6 378 aaKnown RBP14.38□□□□□ -0.11
UPF1-204ENST00000596842 BEX1Q9HBH7 125 aa14.38□□□□□ -0.11
UPF1-204ENST00000596842 CXXC1Q9P0U4 656 aaPredicted RBP14.38□□□□□ -0.11
UPF1-204ENST00000596842 A0A0B4J293 547 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 B8ZZF3 427 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 POLR1CO15160 346 aaPredicted RBP14.37□□□□□ -0.11
UPF1-204ENST00000596842 LCMT2O60294 686 aaKnown RBP14.37□□□□□ -0.11
UPF1-204ENST00000596842 FLYWCH1Q4VC44 716 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 XKRXQ6PP77 449 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 CRIPAKQ8N1N5 446 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 SLAIN1Q8ND83 568 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 BBS1Q8NFJ9 593 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 SMAP2Q8WU79 429 aaPredicted RBP14.37□□□□□ -0.11
UPF1-204ENST00000596842 RNF31Q96EP0 1072 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 DTD2Q96FN9 168 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 SECISBP2Q96T21 854 aaKnown RBP14.37□□□□□ -0.11
UPF1-204ENST00000596842 ZDHHC5Q9C0B5 715 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 GALNT9Q9HCQ5 603 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 ALG5Q9Y673 324 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 HIDE1A8MVS5 230 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 PLA2G10O15496 165 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 ERI3O43414 337 aaKnown RBP14.37□□□□□ -0.11
UPF1-204ENST00000596842 PLATP00750 562 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 SLC27A4Q6P1M0 643 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 NUDT13Q86X67 352 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 ESX1Q8N693 406 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 SETD6Q8TBK2 473 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 NARS2Q96I59 477 aaKnown RBP14.37□□□□□ -0.11
UPF1-204ENST00000596842 SLC38A2Q96QD8 506 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 DHRS9Q9BPW9 319 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 SGPP1Q9BX95 441 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 GLIPR2Q9H4G4 154 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 MED20Q9H944 212 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 NEUROD4Q9HD90 331 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 ZNF624Q9P2J8 865 aaPredicted RBP14.37□□□□□ -0.11
UPF1-204ENST00000596842 PLXNB3Q9ULL4 1909 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 DDOSTP39656 456 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 SLC6A11P48066 632 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 SMIM11AP58511 58 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 EFR3AQ14156 821 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 ZNF311Q5JNZ3 666 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 DPPA4Q7L190 304 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 PRICKLE2Q7Z3G6 844 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 DEDD2Q8WXF8 326 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 RNF208Q9H0X6 261 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 ZNF222Q9UK12 451 aa14.37□□□□□ -0.11
UPF1-204ENST00000596842 ZFR2Q9UPR6 939 aaKnown RBP14.37□□□□□ -0.11
UPF1-204ENST00000596842 E9PQ18 207 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 PGRMC2O15173 223 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 NDUFS4O43181 175 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 FGBP02675 491 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 PRKAR1AP10644 381 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 ACP5P13686 325 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 DGLUCYQ7Z3D6 616 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 AP3S1Q92572 193 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 UQCC2Q9BRT2 126 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 OR1A2Q9Y585 309 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 MN1Q10571 1320 aaPredicted RBP14.36□□□□□ -0.11
UPF1-204ENST00000596842 TRBV23OR9-2A0A075B6M9 112 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 OR2B3O76000 313 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 MRPL3P09001 348 aaKnown RBP14.36□□□□□ -0.11
UPF1-204ENST00000596842 KLHL22Q53GT1 634 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 FCRLBQ6BAA4 426 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 GRASPQ7Z6J2 395 aaPredicted RBP14.36□□□□□ -0.11
UPF1-204ENST00000596842 KLHL31Q9H511 634 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 KCNK6Q9Y257 313 aa14.36□□□□□ -0.11
UPF1-204ENST00000596842 MAU2Q9Y6X3 613 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms