RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 A8MVJ9 347 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 COX6A1P12074 109 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 GABRA3P34903 492 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 GPR143P51810 404 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 CRISP3P54108 245 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 SLC26A5P58743 744 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 HPCAP84074 193 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 PSG6Q00889 435 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 EBPQ15125 230 aaKnown RBP13.6□□□□□ -0.23
VRK3-212ENST00000596814 MAPK11Q15759 364 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 GPAT3Q53EU6 434 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 RPS26P11Q5JNZ5 115 aaPredicted RBP13.6□□□□□ -0.23
VRK3-212ENST00000596814 NPSR1Q6W5P4 371 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 SLC29A4Q7RTT9 530 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 PPP1R32Q7Z5V6 425 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 C9orf40Q8IXQ3 194 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 ANKFN1Q8N957 763 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 OR52E4Q8NGH9 312 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 PIK3R3Q92569 461 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 VMP1Q96GC9 406 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 RSRC1Q96IZ7 334 aaKnown RBP13.6□□□□□ -0.23
VRK3-212ENST00000596814 BTBD9Q96Q07 612 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 SEMA4CQ9C0C4 833 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 ZNF700Q9H0M5 742 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 Q9N2J8 555 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 KLK13Q9UKR3 277 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 PCDHGA6Q9Y5G7 932 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 PIEZO1Q92508 2521 aa13.6□□□□□ -0.23
VRK3-212ENST00000596814 A0A1W2PQ72 361 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 SOCS6O14544 535 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 AK1P00568 194 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 C8BP07358 591 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 CHRM4P08173 479 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 KDELR2P33947 212 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 CLCN2P51788 898 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 PCBP3P57721 371 aaKnown RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 POU6F2P78424 691 aaPredicted RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 MRPS22P82650 360 aaKnown RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 PUM1Q14671 1186 aaKnown RBP eCLIP13.59□□□□□ -0.23
VRK3-212ENST00000596814 NNATQ16517 81 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 ARHGAP11BQ3KRB8 267 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 KIRREL2Q6UWL6 708 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 CCDC80Q76M96 950 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 GALNT10Q86SR1 603 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 APCDD1LQ8NCL9 501 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 CHDHQ8NE62 594 aaPredicted RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 OR11G2Q8NGC1 345 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 BBS10Q8TAM1 723 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 SLC26A7Q8TE54 656 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 STMN2Q93045 179 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 KIAA1143Q96AT1 154 aaPredicted RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 TRNT1Q96Q11 434 aaKnown RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 GAL3ST4Q96RP7 486 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 BTBD2Q9BX70 525 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 GPN2Q9H9Y4 310 aaPredicted RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 CALML5Q9NZT1 146 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 C2orf92A0A1B0GVN3 265 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 TCRBV5S2A0A599 114 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 TCRBV3S1A0A5B6 114 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 GXYLT2A0PJZ3 443 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 TRABD2BA6NFA1 517 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 PDE9AO76083 593 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 PGM3O95394 542 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 H6PDO95479 791 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 SERPINA1P01009 418 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 CT45A8P0DMV1 189 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 CT45A9P0DMV2 189 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 TRHRP34981 398 aaPredicted RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 PPICP45877 212 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 DCAF7P61962 342 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 IL10RAQ13651 578 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 EXT1Q16394 746 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 CT45A2Q5DJT8 189 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 DCST2Q5T1A1 773 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 PRAMEF8Q5VWM4 474 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 PRAMEF7Q5VXH5 474 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 HLA-DQA1Q5Y7H0 255 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 HSDL2Q6YN16 418 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 PATL1Q86TB9 770 aaKnown RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 ADIPOR1Q96A54 375 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 NACC2Q96BF6 587 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 RMND5BQ96G75 393 aaPredicted RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 VPS50Q96JG6 964 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 TREX2Q9BQ50 279 aaPredicted RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 WWTR1Q9GZV5 400 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 RUBCNLQ9H714 662 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 DCAF13Q9NV06 445 aaKnown RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 ZNF223Q9UK11 482 aaPredicted RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 GPR55Q9Y2T6 319 aaPredicted RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 OR10H1Q9Y4A9 318 aa13.59□□□□□ -0.23
VRK3-212ENST00000596814 MRPS18BQ9Y676 258 aaKnown RBP13.59□□□□□ -0.23
VRK3-212ENST00000596814 NSG1A0A0A6YYJ2 146 aa13.58□□□□□ -0.24
VRK3-212ENST00000596814 TRBV11-1A0A0K0K1C0 115 aa13.58□□□□□ -0.24
VRK3-212ENST00000596814 FRG2CA6NGY1 282 aa13.58□□□□□ -0.24
VRK3-212ENST00000596814 GCM2O75603 506 aaPredicted RBP13.58□□□□□ -0.24
VRK3-212ENST00000596814 RHDQ02161 417 aa13.58□□□□□ -0.24
VRK3-212ENST00000596814 TGIF1Q15583 401 aa13.58□□□□□ -0.24
VRK3-212ENST00000596814 BTBD16Q32M84 506 aa13.58□□□□□ -0.24
VRK3-212ENST00000596814 CRB2Q5IJ48 1285 aa13.58□□□□□ -0.24
VRK3-212ENST00000596814 CCNJQ5T5M9 372 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms