RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 NPSR1Q6W5P4 371 aa18.65■□□□□ 0.58
SHMT1-209ENST00000582653 FRMD7Q6ZUT3 714 aa18.65■□□□□ 0.58
SHMT1-209ENST00000582653 WDSUB1Q8N9V3 476 aa18.65■□□□□ 0.58
SHMT1-209ENST00000582653 OR7G2Q8NG99 324 aa18.65■□□□□ 0.58
SHMT1-209ENST00000582653 EPS8L3Q8TE67 593 aaKnown RBP18.65■□□□□ 0.58
SHMT1-209ENST00000582653 NRGNQ92686 78 aa18.65■□□□□ 0.58
SHMT1-209ENST00000582653 RNASE6Q93091 150 aaKnown RBP18.65■□□□□ 0.58
SHMT1-209ENST00000582653 ABTB1Q969K4 478 aaPredicted RBP18.65■□□□□ 0.58
SHMT1-209ENST00000582653 COL21A1Q96P44 957 aa18.65■□□□□ 0.58
SHMT1-209ENST00000582653 ADOQ96SZ5 270 aa18.65■□□□□ 0.58
SHMT1-209ENST00000582653 SH3GL2Q99962 352 aa18.65■□□□□ 0.58
SHMT1-209ENST00000582653 CALHM2Q9HA72 323 aa18.65■□□□□ 0.58
SHMT1-209ENST00000582653 GIMAP4Q9NUV9 329 aa18.65■□□□□ 0.58
SHMT1-209ENST00000582653 SIRT5Q9NXA8 310 aa18.65■□□□□ 0.58
SHMT1-209ENST00000582653 GRID1Q9ULK0 1009 aa18.65■□□□□ 0.58
SHMT1-209ENST00000582653 POLR3HQ9Y535 204 aaPredicted RBP18.65■□□□□ 0.58
SHMT1-209ENST00000582653 PRAMEF25A6NGN4 478 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 SNPHO15079 494 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 BCAS2O75934 225 aaPredicted RBP18.64■□□□□ 0.57
SHMT1-209ENST00000582653 CPA3P15088 417 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 DDCP20711 480 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 MPIP34949 423 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 CRHR1P34998 444 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 CCT5P48643 541 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 CEBPEQ15744 281 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 IMPG1Q17R60 797 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 CCDC153Q494R4 210 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 CFAP157Q5JU67 520 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 SAMD14Q8IZD0 417 aaPredicted RBP18.64■□□□□ 0.57
SHMT1-209ENST00000582653 EIF1ADQ8N9N8 165 aaKnown RBP18.64■□□□□ 0.57
SHMT1-209ENST00000582653 CCDC63Q8NA47 563 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 OR4N2Q8NGD1 307 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 RDH11Q8TC12 318 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 VSTM2LQ96N03 204 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 BTBD9Q96Q07 612 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 BBS4Q96RK4 519 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 POLDIP3Q9BY77 421 aaKnown RBP18.64■□□□□ 0.57
SHMT1-209ENST00000582653 FOLH1BQ9HBA9 442 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 RASSF1Q9NS23 344 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 CRIM1Q9NZV1 1036 aa18.64■□□□□ 0.57
SHMT1-209ENST00000582653 EXO1Q9UQ84 846 aaKnown RBP18.64■□□□□ 0.57
SHMT1-209ENST00000582653 OR6C70A6NIJ9 312 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 MYO1GB0I1T2 1018 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 TSPAN2O60636 221 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 ERN1O75460 977 aaKnown RBP18.63■□□□□ 0.57
SHMT1-209ENST00000582653 CRCPO75575 148 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 CBR3O75828 277 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 ACTL6AO96019 429 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 JUNP05412 331 aaKnown RBP18.63■□□□□ 0.57
SHMT1-209ENST00000582653 ZNF136P52737 540 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 DNAJB13P59910 316 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 ZNF763Q0D2J5 394 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 ERCC6LQ2NKX8 1250 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 TRIM46Q7Z4K8 759 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 TDRPQ86YL5 185 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 FAM9CQ8IZT9 166 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 C4orf33Q8N1A6 199 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.63■□□□□ 0.57
SHMT1-209ENST00000582653 ZPLD1Q8TCW7 415 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 NINJ1Q92982 152 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 TMCO6Q96DC7 493 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 ERP27Q96DN0 273 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 TRIB1Q96RU8 372 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 OXSMQ9NWU1 459 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 SENP1Q9P0U3 644 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 MED13LQ71F56 2210 aa18.63■□□□□ 0.57
SHMT1-209ENST00000582653 SPG11Q96JI7 2443 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 MBD3L4A6NDZ8 208 aaPredicted RBP18.62■□□□□ 0.57
SHMT1-209ENST00000582653 MBD3L3A6NE82 208 aaPredicted RBP18.62■□□□□ 0.57
SHMT1-209ENST00000582653 MBD3L5A6NJ08 208 aaPredicted RBP18.62■□□□□ 0.57
SHMT1-209ENST00000582653 COPEO14579 308 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 PLOD3O60568 738 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 CPN1P15169 458 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 KRT4P19013 534 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 CTSSP25774 331 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 DAZAP2Q15038 168 aaPredicted RBP18.62■□□□□ 0.57
SHMT1-209ENST00000582653 CLEC6AQ6EIG7 209 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 OR5M10Q6IEU7 315 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 FAM71E1Q6IPT2 247 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 SLC44A2Q8IWA5 706 aaPredicted RBP18.62■□□□□ 0.57
SHMT1-209ENST00000582653 CNPY4Q8N129 248 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 MBD3L2Q8NHZ7 208 aaPredicted RBP18.62■□□□□ 0.57
SHMT1-209ENST00000582653 FAM222BQ8WU58 562 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 EFHD2Q96C19 240 aaPredicted RBP18.62■□□□□ 0.57
SHMT1-209ENST00000582653 SLC35A4Q96G79 324 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 FOXC2Q99958 501 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 PTGDR2Q9Y5Y4 395 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 ZFHX3Q15911 3703 aa18.62■□□□□ 0.57
SHMT1-209ENST00000582653 KIAA1549Q9HCM3 1950 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 IL18BPO95998 194 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 OPRM1P35372 400 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 MC3RP41968 323 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 GSTM5P46439 218 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 NCBP2P52298 156 aaKnown RBP eCLIP18.61■□□□□ 0.57
SHMT1-209ENST00000582653 AGFG1P52594 562 aaKnown RBP18.61■□□□□ 0.57
SHMT1-209ENST00000582653 FLYWCH1Q4VC44 716 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 NOXRED1Q6NXP6 359 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 LARP4Q71RC2 724 aaKnown RBP eCLIP18.61■□□□□ 0.57
SHMT1-209ENST00000582653 OR14L1PQ8NHC6 308 aa18.61■□□□□ 0.57
SHMT1-209ENST00000582653 EGLN2Q96KS0 407 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms