RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TANKQ92844 425 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 MFSD3Q96ES6 412 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 INPP5KQ9BT40 448 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 ANO10Q9NW15 660 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 CAPN11Q9UMQ6 739 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 M0QZ24 198 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 UGT2B11O75310 529 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 SNUPNO95149 360 aaKnown RBP14.26□□□□□ -0.13
VPS53-218ENST00000575207 NUDT17P0C025 328 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 AP1S2P56377 157 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 TGM3Q08188 693 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 SPOCK1Q08629 439 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 TCEAL1Q15170 157 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 ASTE1Q2TB18 679 aaPredicted RBP14.26□□□□□ -0.13
VPS53-218ENST00000575207 PPP4R4Q6NUP7 873 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 CES3Q6UWW8 571 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 BHLHA15Q7RTS1 189 aaPredicted RBP14.26□□□□□ -0.13
VPS53-218ENST00000575207 ZNF615Q8N8J6 731 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 FBXL8Q96CD0 374 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 KCNC2Q96PR1 638 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 RSPO3Q9BXY4 272 aaPredicted RBP14.26□□□□□ -0.13
VPS53-218ENST00000575207 ROGDIQ9GZN7 287 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 IL22Q9GZX6 179 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 NXF5Q9H1B4 397 aaKnown RBP14.26□□□□□ -0.13
VPS53-218ENST00000575207 RPF2Q9H7B2 306 aaKnown RBP14.26□□□□□ -0.13
VPS53-218ENST00000575207 NTN4Q9HB63 628 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 CORO1CQ9ULV4 474 aaPredicted RBP14.26□□□□□ -0.13
VPS53-218ENST00000575207 PPIAL4AQ9Y536 164 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 KCNE2Q9Y6J6 123 aa14.26□□□□□ -0.13
VPS53-218ENST00000575207 SCAMP2O15127 329 aaKnown RBP14.25□□□□□ -0.13
VPS53-218ENST00000575207 ADAP00813 363 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 PTAFRP25105 342 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 ATP5A1P25705 553 aaKnown RBP14.25□□□□□ -0.13
VPS53-218ENST00000575207 APOBEC3AP31941 199 aaPredicted RBP14.25□□□□□ -0.13
VPS53-218ENST00000575207 FDFT1P37268 417 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 RGS4P49798 205 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 MST1LQ2TV78 715 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 RAET1LQ5VY80 246 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 OR5M10Q6IEU7 315 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 VN1R5Q7Z5H4 357 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 UBE3DQ7Z6J8 389 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 THOC6Q86W42 341 aaKnown RBP14.25□□□□□ -0.13
VPS53-218ENST00000575207 MYO1HQ8N1T3 1032 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 ACOT4Q8N9L9 421 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 ZBTB8AQ96BR9 441 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 MUCL1Q96DR8 90 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 OMA1Q96E52 524 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 CCT8L2Q96SF2 557 aa14.25□□□□□ -0.13
VPS53-218ENST00000575207 DDX47Q9H0S4 455 aaKnown RBP14.25□□□□□ -0.13
VPS53-218ENST00000575207 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.24□□□□□ -0.13
VPS53-218ENST00000575207 CTAGE9A4FU28 777 aa14.24□□□□□ -0.13
VPS53-218ENST00000575207 ANKDD1BA6NHY2 528 aa14.24□□□□□ -0.13
VPS53-218ENST00000575207 H3BML4 177 aa14.24□□□□□ -0.13
VPS53-218ENST00000575207 H2AFYO75367 372 aaKnown RBP14.24□□□□□ -0.13
VPS53-218ENST00000575207 SCELO95171 688 aa14.24□□□□□ -0.13
VPS53-218ENST00000575207 APRTP07741 180 aa14.24□□□□□ -0.13
VPS53-218ENST00000575207 F7P08709 466 aaPredicted RBP14.24□□□□□ -0.13
VPS53-218ENST00000575207 PRTN3P24158 256 aa14.24□□□□□ -0.13
VPS53-218ENST00000575207 NR1I3Q14994 352 aa14.24□□□□□ -0.13
VPS53-218ENST00000575207 TIMM23BQ5SRD1 257 aa14.24□□□□□ -0.13
VPS53-218ENST00000575207 NEPROQ6NW34 567 aa14.24□□□□□ -0.13
VPS53-218ENST00000575207 VPS39Q96JC1 886 aa14.24□□□□□ -0.13
VPS53-218ENST00000575207 OR10A5Q9H207 317 aa14.24□□□□□ -0.13
VPS53-218ENST00000575207 NT5DC2Q9H857 520 aa14.24□□□□□ -0.13
VPS53-218ENST00000575207 SLC22A14Q9Y267 594 aa14.24□□□□□ -0.13
VPS53-218ENST00000575207 NOTCH3Q9UM47 2321 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 OR2M5A3KFT3 312 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 AKR1B10O60218 316 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 PDE5AO76074 875 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 GUCA1CO95843 209 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 GPX3P22352 226 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 CD40P25942 277 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 PHC1P78364 1004 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 MORF4L2Q15014 288 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 STK11Q15831 433 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 STX1AQ16623 288 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 BEAN1Q3B7T3 259 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 ZNF470Q6ECI4 717 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 RHOUQ7L0Q8 258 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 REC114Q7Z4M0 266 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 GGNQ86UU5 652 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 BPIFB2Q8N4F0 458 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 ANKS4BQ8N8V4 417 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 F2RL3Q96RI0 385 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 TBCDQ9BTW9 1192 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 KIFC1Q9BW19 673 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 TRIM54Q9BYV2 358 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 CXorf21Q9HAI6 301 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 MS4A12Q9NXJ0 267 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 TRMT6Q9UJA5 497 aaKnown RBP14.23□□□□□ -0.13
VPS53-218ENST00000575207 MCTS1Q9ULC4 181 aaKnown RBP14.23□□□□□ -0.13
VPS53-218ENST00000575207 AP4B1Q9Y6B7 739 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 COMMD10Q9Y6G5 202 aa14.23□□□□□ -0.13
VPS53-218ENST00000575207 LOC105371242A0A075B767 164 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 NTN1O95631 604 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 GPR75O95800 540 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 AVPP01185 164 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 C1GALT1C1LP0DN25 315 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 HK1P19367 917 aa14.22□□□□□ -0.13
VPS53-218ENST00000575207 HIST1H1TP22492 207 aaPredicted RBP14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms