RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 CACYBPQ9HB71 228 aaKnown RBP13.14□□□□□ -0.31
VPS33B-208ENST00000574755 ADAP2Q9NPF8 381 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 GPR55Q9Y2T6 319 aaPredicted RBP13.14□□□□□ -0.31
VPS33B-208ENST00000574755 WDR45Q9Y484 360 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 CPSF4LA6NMK7 179 aaKnown RBP13.14□□□□□ -0.31
VPS33B-208ENST00000574755 SGK494L7N484 410 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 CYR61O00622 381 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 CLPXO76031 633 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 ATP1B1P05026 303 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 CD36P16671 472 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 TNNI3P19429 210 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 NT5EP21589 574 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 ALDH4A1P30038 563 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 PRKAR1BP31321 381 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 LSM11P83369 360 aaKnown RBP eCLIP13.14□□□□□ -0.31
VPS33B-208ENST00000574755 FRRS1Q6ZNA5 592 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 ZER1Q7Z7L7 766 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 ZNF687Q8N1G0 1237 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 CA13Q8N1Q1 262 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 MORN4Q8NDC4 146 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 ARHGDIGQ99819 225 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 PLGRKTQ9HBL7 147 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 NECTIN3Q9NQS3 549 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 DOLKQ9UPQ8 538 aa13.14□□□□□ -0.31
VPS33B-208ENST00000574755 UBXN7O94888 489 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 GPR75O95800 540 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 CCNYL3P0C7X3 344 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 SOX18P35713 384 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 EMP3P54852 163 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 VBP1P61758 197 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 COX10Q12887 443 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 ELOCQ15369 112 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 SYT16Q17RD7 645 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 ARHGAP11BQ3KRB8 267 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 SLX4IPQ5VYV7 408 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 PEX5LQ8IYB4 626 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 GJD3Q8N144 294 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 C19orf47Q8N9M1 422 aaKnown RBP13.13□□□□□ -0.31
VPS33B-208ENST00000574755 SLC38A4Q969I6 547 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 IL21RQ9HBE5 538 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 C19orf53Q9UNZ5 99 aaPredicted RBP13.13□□□□□ -0.31
VPS33B-208ENST00000574755 CHST2Q9Y4C5 530 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 M0R3G1 203 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 RDH16O75452 317 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 CYP7B1O75881 506 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 WNT1P04628 370 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 ACP2P11117 423 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 MAOBP27338 520 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 CD38P28907 300 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 IFNA8P32881 189 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 RGS8P57771 180 aaPredicted RBP13.13□□□□□ -0.31
VPS33B-208ENST00000574755 NDUFA9Q16795 377 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 TIGD6Q17RP2 521 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 PUS10Q3MIT2 529 aaKnown RBP13.13□□□□□ -0.31
VPS33B-208ENST00000574755 CCNJQ5T5M9 372 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 TYW3Q6IPR3 259 aaKnown RBP13.13□□□□□ -0.31
VPS33B-208ENST00000574755 C1orf94Q6P1W5 598 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 CLIP4Q8N3C7 705 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 AVL9Q8NBF6 648 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 NDNFQ8TB73 568 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 ZNF675Q8TD23 568 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 MTHFD2LQ9H903 347 aaPredicted RBP13.13□□□□□ -0.31
VPS33B-208ENST00000574755 ANKHQ9HCJ1 492 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 NDOR1Q9UHB4 597 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 ZNF443Q9Y2A4 671 aaPredicted RBP13.13□□□□□ -0.31
VPS33B-208ENST00000574755 IFT52Q9Y366 437 aa13.13□□□□□ -0.31
VPS33B-208ENST00000574755 EFCAB10A6NFE3 127 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 AP3D1O14617 1153 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 CSF2P04141 144 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 CTSBP07858 339 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 ADORA3P0DMS8 318 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 CD27P26842 260 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 TGFBR2P37173 567 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 LIPAP38571 399 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 PPM1FP49593 454 aaPredicted RBP13.12□□□□□ -0.31
VPS33B-208ENST00000574755 HOXC5Q00444 222 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 ST3GAL3Q11203 375 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 SMAD2Q15796 467 aaKnown RBP13.12□□□□□ -0.31
VPS33B-208ENST00000574755 MOGQ16653 247 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 FHL5Q5TD97 284 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 C12orf73Q69YU5 71 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 KLHL35Q6PF15 583 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 OR9A4Q8NGU2 314 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 LMX1AQ8TE12 382 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 NR4A3Q92570 626 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 PIGUQ9H490 435 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 CNOT2Q9NZN8 540 aaKnown RBP13.12□□□□□ -0.31
VPS33B-208ENST00000574755 ZNF232Q9UNY5 417 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 A0A087WUU8 490 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 SLC9B1P1A6NJY1 282 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 CLDN24A6NM45 220 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 ENTPD6O75354 484 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 TP53P04637 393 aaPredicted RBP13.12□□□□□ -0.31
VPS33B-208ENST00000574755 CALRP27797 417 aaKnown RBP13.12□□□□□ -0.31
VPS33B-208ENST00000574755 TRHRP34981 398 aaPredicted RBP13.12□□□□□ -0.31
VPS33B-208ENST00000574755 NCS1P62166 190 aa13.12□□□□□ -0.31
VPS33B-208ENST00000574755 SNRPGP62308 76 aaKnown RBP13.12□□□□□ -0.31
VPS33B-208ENST00000574755 ALDH6A1Q02252 535 aaKnown RBP13.12□□□□□ -0.31
VPS33B-208ENST00000574755 LARS2Q15031 903 aaKnown RBP13.12□□□□□ -0.31
VPS33B-208ENST00000574755 TRAM2Q15035 370 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms