RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 WDR41Q9HAD4 459 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 PRM3Q9NNZ6 103 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 CBLN4Q9NTU7 201 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 EHD3Q9NZN3 535 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 VWA7Q9Y334 891 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 ZNF337Q9Y3M9 751 aa16.1■□□□□ 0.17
CLK3-227ENST00000570296 TMEM89A2RUT3 159 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 OR6C70A6NIJ9 312 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 GLOD5A6NK44 160 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 SHISA9B4DS77 424 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 H7C417 338 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 SH3BGRLO75368 114 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 VENTXO95231 258 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 TGFAP01135 160 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 TGFB1P01137 390 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 AHSGP02765 367 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 PTNP21246 168 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 GRK2P25098 689 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 SERPINB1P30740 379 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 SRP14P37108 136 aaKnown RBP16.09■□□□□ 0.17
CLK3-227ENST00000570296 CLDN20P56880 219 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 C21orf58P58505 322 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 TBX2Q13207 712 aaPredicted RBP16.09■□□□□ 0.17
CLK3-227ENST00000570296 GGTLC2Q14390 218 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 DEPDC1Q5TB30 811 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 RAET1LQ5VY80 246 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 OR5M10Q6IEU7 315 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 SEZ6L2Q6UXD5 910 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 FRA10AC1Q70Z53 315 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 GALNT7Q86SF2 657 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 OR4K17Q8NGC6 315 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 KAT2AQ92830 837 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 UBE2E3Q969T4 207 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 RGMAQ96B86 450 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 PRR14Q9BWN1 585 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 CNOT10Q9H9A5 744 aaKnown RBP16.09■□□□□ 0.17
CLK3-227ENST00000570296 GLRX2Q9NS18 164 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 LYARQ9NX58 379 aaKnown RBP16.09■□□□□ 0.17
CLK3-227ENST00000570296 CORO1CQ9ULV4 474 aaPredicted RBP16.09■□□□□ 0.17
CLK3-227ENST00000570296 CLEC4AQ9UMR7 237 aa16.09■□□□□ 0.17
CLK3-227ENST00000570296 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.08■□□□□ 0.16
CLK3-227ENST00000570296 VWC2LB2RUY7 222 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 B4DXG7 233 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 FAM157AC9JC47 383 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 RAMP1O60894 148 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 IPO7O95373 1038 aaKnown RBP16.08■□□□□ 0.16
CLK3-227ENST00000570296 APEHP13798 732 aaKnown RBP16.08■□□□□ 0.16
CLK3-227ENST00000570296 ZNF37AP17032 561 aaPredicted RBP16.08■□□□□ 0.16
CLK3-227ENST00000570296 IL32P24001 234 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 SLC6A8P48029 635 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 RAP1GDS1P52306 607 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 TERF1P54274 439 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 TBCCQ15814 346 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 SGCBQ16585 318 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 ANKRD22Q5VYY1 191 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 HIST2H2BDQ6DRA6 164 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 OR52E8Q6IFG1 317 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 CAVIN1Q6NZI2 390 aaKnown RBP16.08■□□□□ 0.16
CLK3-227ENST00000570296 ADAMTSL2Q86TH1 951 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 HTRA1Q92743 480 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 GCDHQ92947 438 aaPredicted RBP16.08■□□□□ 0.16
CLK3-227ENST00000570296 COL21A1Q96P44 957 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 CENPKQ9BS16 269 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 ITPAQ9BY32 194 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 PRRG4Q9BZD6 226 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 ASB4Q9Y574 426 aa16.08■□□□□ 0.16
CLK3-227ENST00000570296 A0A1W2PR48 441 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 TO15178 435 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 GCM2O75603 506 aaPredicted RBP16.07■□□□□ 0.16
CLK3-227ENST00000570296 CCDC166P0CW27 439 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 HK1P19367 917 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 S1PR1P21453 382 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 TTKP33981 857 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 GGT5P36269 586 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 EFNA4P52798 201 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 ARFIP1P53367 373 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 GANABQ14697 944 aaKnown RBP16.07■□□□□ 0.16
CLK3-227ENST00000570296 PDK4Q16654 411 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.07■□□□□ 0.16
CLK3-227ENST00000570296 MRM1Q6IN84 353 aaKnown RBP16.07■□□□□ 0.16
CLK3-227ENST00000570296 FAM45BPQ6NSW5 357 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 CNTN4Q8IWV2 1026 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 ZNF619Q8N2I2 560 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 AGGF1Q8N302 714 aaeCLIP16.07■□□□□ 0.16
CLK3-227ENST00000570296 TCAIMQ8N3R3 496 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 NKAPQ8N5F7 415 aaKnown RBP16.07■□□□□ 0.16
CLK3-227ENST00000570296 SNX31Q8N9S9 440 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 MCUQ8NE86 351 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 FAM45AQ8TCE6 357 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 POTEKPQ9BYX7 375 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 OR51B5Q9H339 312 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 XPR1Q9UBH6 696 aa16.07■□□□□ 0.16
CLK3-227ENST00000570296 EPN1Q9Y6I3 576 aaPredicted RBP16.07■□□□□ 0.16
CLK3-227ENST00000570296 A0A1W2PS29 197 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 OR2M5A3KFT3 312 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 H3BML4 177 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 NDUFS8O00217 210 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 PLPP1O14494 284 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 PIK3R1P27986 724 aa16.06■□□□□ 0.16
CLK3-227ENST00000570296 MAGEA3P43357 314 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms