RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 DCTP40126 519 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 XCR1P46094 333 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 MAN2A2P49641 1150 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 OLR1P78380 273 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 CCL7P80098 99 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 DUSP8Q13202 625 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 PDK3Q15120 406 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 ELAVL1Q15717 326 aaKnown RBP7.44□□□□□ -1.22
VPS39-213ENST00000570062 GPR19Q15760 415 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 NRF1Q16656 503 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 DEFB110Q30KQ9 67 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 COLEC12Q5KU26 742 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 XP32Q5T750 250 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 FHL5Q5TD97 284 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 GUSBP11Q6P575 273 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 DHRS4L2Q6PKH6 230 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 PPP1R3BQ86XI6 285 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 CMIPQ8IY22 773 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 SETD9Q8NE22 299 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 OR7G2Q8NG99 324 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 OR5T3Q8NGG3 340 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 TFAP2CQ92754 450 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 TAMM41Q96BW9 452 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 GIMAP5Q96F15 307 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 PEX11GQ96HA9 241 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 MAGED4Q96JG8 741 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 CNDP2Q96KP4 475 aaKnown RBP7.44□□□□□ -1.22
VPS39-213ENST00000570062 LRFN5Q96NI6 719 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 SLC46A1Q96NT5 459 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 CSF3RQ99062 836 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 PSD2Q9BQI7 771 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 LMF2Q9BU23 707 aaKnown RBP7.44□□□□□ -1.22
VPS39-213ENST00000570062 YIPF2Q9BWQ6 316 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 STRADBQ9C0K7 418 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 SAP130Q9H0E3 1048 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 NTN4Q9HB63 628 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 Q9N2J8 555 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 KRCC1Q9NPI7 259 aaPredicted RBP7.44□□□□□ -1.22
VPS39-213ENST00000570062 FBXO8Q9NRD0 319 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 MAT2BQ9NZL9 334 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 NDUFAF4Q9P032 175 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 NDOR1Q9UHB4 597 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 NXT1Q9UKK6 140 aaKnown RBP7.44□□□□□ -1.22
VPS39-213ENST00000570062 MKL2Q9ULH7 1088 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 SH3GLB1Q9Y371 365 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 MRPS2Q9Y399 296 aaKnown RBP7.44□□□□□ -1.22
VPS39-213ENST00000570062 WDR45Q9Y484 360 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 V9GYQ6 96 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 ATRXP46100 2492 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 ZNF318Q5VUA4 2279 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 IGLV3-12A0A075B6K2 115 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 IGHV5-10-1A0A0J9YXX1 117 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 HTR3EA5X5Y0 456 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 ZNF860A6NHJ4 632 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 A8MU76 341 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 B4E171 279 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 SHISA8B8ZZ34 492 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 TNFRSF11BO00300 401 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 NTN3O00634 580 aaPredicted RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 SOCS2O14508 198 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 EI24O14681 340 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 B4GALT2O60909 372 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 LDB3O75112 727 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 JRKO75564 520 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 PRKRAO75569 313 aaKnown RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 GCM2O75603 506 aaPredicted RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 NKX2-2O95096 273 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 GADD45GO95257 159 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 LGI1O95970 557 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 IFNA16P05015 189 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 ZNF806P0C7X5 589 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 PABPC4LP0CB38 370 aaKnown RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 FGF5P12034 268 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 FOLR1P15328 257 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 AQP1P29972 269 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 CSF2RBP32927 897 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 TRHRP34981 398 aaPredicted RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 MAP3K8P41279 467 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 TSPAN7P41732 249 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 CHN2P52757 468 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 CSNK2BP67870 215 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 POU6F2P78424 691 aaPredicted RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 DCDP81605 110 aaKnown RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 PPP2R2BQ00005 443 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 CFHR1Q03591 330 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 MGAT2Q10469 447 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 FUT7Q11130 342 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 COX10Q12887 443 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 TOP3AQ13472 1001 aaPredicted RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 C16orf72Q14CZ0 275 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 MICAQ29983 383 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 SLC36A3Q495N2 470 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 CYP27C1Q4G0S4 372 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 LIN52Q52LA3 116 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 ZNF311Q5JNZ3 666 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 EXOSC6Q5RKV6 272 aaKnown RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 SNAP47Q5SQN1 464 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 OTUD3Q5T2D3 398 aaPredicted RBP7.43□□□□□ -1.22
VPS39-213ENST00000570062 ARHGAP40Q5TG30 622 aa7.43□□□□□ -1.22
VPS39-213ENST00000570062 PRSS41Q7RTY9 318 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms