RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SFXN2Q96NB2 322 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 ZFP3Q96NJ6 502 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 UCN2Q96RP3 112 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 MRPL57Q9BQC6 102 aaKnown RBP15.29■□□□□ 0.04
CLN3-211ENST00000564091 BRF2Q9HAW0 419 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 CLCF1Q9UBD9 225 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 KIAA1549Q9HCM3 1950 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 TNFSF12-TNFSF13A0A0A6YY99 330 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 A8MT66 165 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 A8MXE2 369 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 B4DXG7 233 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 CASKO14936 926 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 ZIC3O60481 467 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 TNFSF13O75888 250 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 OR4F21O95013 312 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 GOSR1O95249 250 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 CT45A8P0DMV1 189 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 CT45A9P0DMV2 189 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 ZNF708P17019 499 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 CLDN18P56856 261 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 NKX6-1P78426 367 aaPredicted RBP15.28■□□□□ 0.04
CLN3-211ENST00000564091 FAM27E3Q08E93 113 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 GAB1Q13480 694 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 CT45A2Q5DJT8 189 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 GRAMD2AQ8IUY3 354 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 TMEM151AQ8N4L1 468 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 SLC35A4Q96G79 324 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 BTBD9Q96Q07 612 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 MRPL46Q9H2W6 279 aaKnown RBP15.28■□□□□ 0.04
CLN3-211ENST00000564091 PIGMQ9H3S5 423 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 NMRK1Q9NWW6 199 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 C6orf203Q9P0P8 240 aaPredicted RBP15.28■□□□□ 0.04
CLN3-211ENST00000564091 VPS29Q9UBQ0 182 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 DKKL1Q9UK85 242 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 PACSIN3Q9UKS6 424 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 DLGAP4Q9Y2H0 992 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 WIF1Q9Y5W5 379 aa15.28■□□□□ 0.04
CLN3-211ENST00000564091 A0A1W2PNV4 684 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 MANBAO00462 879 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 TSPAN2O60636 221 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 IL3P08700 152 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 INHBBP09529 407 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 CTAGE8P0CG41 777 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 COL6A2P12110 1019 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 ADSLP30566 484 aaPredicted RBP15.27■□□□□ 0.04
CLN3-211ENST00000564091 CPOXP36551 454 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 HSD17B3P37058 310 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 DIO3P55073 304 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 ETF1P62495 437 aaKnown RBP15.27■□□□□ 0.04
CLN3-211ENST00000564091 TRA2BP62995 288 aaKnown RBP15.27■□□□□ 0.04
CLN3-211ENST00000564091 TEX35Q5T0J7 233 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 C8orf74Q6P047 294 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 NPSR1Q6W5P4 371 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 LARP4Q71RC2 724 aaKnown RBP eCLIP15.27■□□□□ 0.041e-6■□□□□ 8.2
CLN3-211ENST00000564091 ZNF572Q7Z3I7 529 aaPredicted RBP15.27■□□□□ 0.04
CLN3-211ENST00000564091 CTAGE4Q8IX94 777 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 CDYL2Q8N8U2 506 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 OR4N2Q8NGD1 307 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 UHMK1Q8TAS1 419 aaKnown RBP15.27■□□□□ 0.04
CLN3-211ENST00000564091 ZNF675Q8TD23 568 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 SMPDL3BQ92485 455 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 EXOSC8Q96B26 276 aaKnown RBP15.27■□□□□ 0.04
CLN3-211ENST00000564091 VSTM2LQ96N03 204 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 PAFAH2Q99487 392 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 FUT8Q9BYC5 575 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 ACBD3Q9H3P7 528 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 CDC42EP4Q9H3Q1 356 aaKnown RBP15.27■□□□□ 0.04
CLN3-211ENST00000564091 BEX4Q9NWD9 120 aaPredicted RBP15.27■□□□□ 0.04
CLN3-211ENST00000564091 NDRG3Q9UGV2 375 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 TRPS1Q9UHF7 1281 aa15.27■□□□□ 0.04
CLN3-211ENST00000564091 TRIM49D1C9J1S8 452 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 POC1B-GALNT4F8VUJ3 575 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 ABCB7O75027 752 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 BCAS2O75934 225 aaPredicted RBP15.26■□□□□ 0.03
CLN3-211ENST00000564091 SMNDC1O75940 238 aaKnown RBP eCLIP15.26■□□□□ 0.03
CLN3-211ENST00000564091 CHMP24386 653 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 GRK2P25098 689 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 DPP4P27487 766 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 SERPINB9P50453 376 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 RAE1P78406 368 aaKnown RBP15.26■□□□□ 0.03
CLN3-211ENST00000564091 CLCQ05315 142 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 EFR3AQ14156 821 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 P4HA3Q7Z4N8 544 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 CXorf67Q86X51 503 aaPredicted RBP15.26■□□□□ 0.03
CLN3-211ENST00000564091 RELL1Q8IUW5 271 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 EFHD2Q96C19 240 aaPredicted RBP15.26■□□□□ 0.03
CLN3-211ENST00000564091 C1QTNF3Q9BXJ4 246 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 FOLH1BQ9HBA9 442 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 MCM8Q9UJA3 840 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 EIF3LQ9Y262 564 aaKnown RBP15.26■□□□□ 0.03
CLN3-211ENST00000564091 TESMINQ9Y4I5 508 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 FREM3P0C091 2139 aa15.26■□□□□ 0.03
CLN3-211ENST00000564091 JMJD1CQ15652 2540 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 HCRTR2O43614 444 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 PCDH7O60245 1069 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 SUPT7LO94864 414 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 IL12BP29460 328 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 KRT20P35900 424 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 GAS1P54826 345 aa15.25■□□□□ 0.03
CLN3-211ENST00000564091 B3GALT5-AS1P59052 145 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms