RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ARHGEF39Q8N4T4 335 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 AQP11Q8NBQ7 271 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 C17orf47Q8NEP4 570 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 OR4D9Q8NGE8 314 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 OR8J1Q8NGP2 316 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 OR52P1PQ8NH57 321 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 OR14A16Q8NHC5 309 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 PIGXQ8TBF5 258 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 GNPDA2Q8TDQ7 276 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 NUDT8Q8WV74 236 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 ACOT11Q8WXI4 607 aaPredicted RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 NCSTNQ92542 709 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 OSTF1Q92882 214 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 RFKQ969G6 155 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 COL26A1Q96A83 441 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 GIMAP5Q96F15 307 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 CRELD1Q96HD1 420 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 FBXL20Q96IG2 436 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 SLC46A1Q96NT5 459 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 TGM7Q96PF1 710 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 FEVQ99581 238 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 MAP3K3Q99759 626 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 ZNF559Q9BR84 538 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 FAM117AQ9C073 453 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 AMBRA1Q9C0C7 1298 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 SLC7A5P2Q9GIP4 190 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 AICDAQ9GZX7 198 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 SLC38A1Q9H2H9 487 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 TCEAL2Q9H3H9 227 aaPredicted RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 SMURF2Q9HAU4 748 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 ADAP2Q9NPF8 381 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 CUTCQ9NTM9 273 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 ACER3Q9NUN7 267 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 MAT2BQ9NZL9 334 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 AKAP7Q9P0M2 348 aaPredicted RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 COPS7AQ9UBW8 275 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 NXT1Q9UKK6 140 aaKnown RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 BAIAP2Q9UQB8 552 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 ZNF443Q9Y2A4 671 aaPredicted RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 LAMA3Q16787 3333 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 ARHGEF17Q96PE2 2063 aaPredicted RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 LOC105369274A0A096LPK9 316 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 LOC102723532A0A0G2JNH3 316 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 C2orf92A0A1B0GVN3 265 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 SH3PXD2BA1X283 911 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 TRAPPC13A5PLN9 417 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 EFCAB7A8K855 629 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 E9PQ18 207 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 TMX2-CTNND1H3BSU7 103 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 RGS10O43665 173 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 FGF17O60258 216 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 PCDHGA12O60330 932 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 BRINP1O60477 761 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 CNOT3O75175 753 aaKnown RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 TRMUO75648 421 aaKnown RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 OPN1SWP03999 348 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 CHRM4P08173 479 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 GNAO1P09471 354 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 LINGO3P0C6S8 592 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 ZNF883P0CG24 379 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 FPR3P25089 353 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 ELAVL4P26378 380 aaKnown RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 DCKP27707 260 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 CALRP27797 417 aaKnown RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 RORAP35398 523 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 STAT5AP42229 794 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 SERPINB10P48595 397 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 SNRPGP62308 76 aaKnown RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 SIM1P81133 766 aaPredicted RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 IL1RL1Q01638 556 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 FUT7Q11130 342 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 CDK5R2Q13319 367 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 TMED1Q13445 227 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 C1DQ13901 141 aaKnown RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 ELAVL1Q15717 326 aaKnown RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 GPR19Q15760 415 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 TBCEQ15813 527 aaPredicted RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 SYPL1Q16563 259 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 DUSP7Q16829 419 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 EXOC3L2Q2M3D2 409 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 DEFB133Q30KQ1 61 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 ZIK1Q3SY52 487 aaPredicted RBP7.02□□□□□ -1.29
VPS39-204ENST00000561818 ANKDD1AQ495B1 522 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 NADK2Q4G0N4 442 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 ZNF542PQ5EBM4 170 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 TMEM31Q5JXX7 168 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 FHL5Q5TD97 284 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 RNLSQ5VYX0 342 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 C1orf94Q6P1W5 598 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 TBPL2Q6SJ96 375 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 DEF8Q6ZN54 512 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 PLEKHM3Q6ZWE6 761 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 NUP54Q7Z3B4 507 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 MISPQ8IVT2 679 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 TMEFF1Q8IYR6 380 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 OR4N4Q8N0Y3 316 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 MMP21Q8N119 569 aa7.02□□□□□ -1.29
VPS39-204ENST00000561818 FAM160A2Q8N612 972 aaPredicted RBP7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms