RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ICOSLGO75144 302 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 EPXP11678 715 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 HSD3B1P14060 373 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 HSD3B2P26439 372 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 HOXC12P31275 282 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 TIA1P31483 386 aaKnown RBP eCLIP17.28■□□□□ 0.36
VPS35-202ENST00000561713 ACSM2AQ08AH3 577 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 LCP2Q13094 533 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 ACSM2BQ68CK6 577 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 C16orf78Q8WTQ4 265 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 MZB1Q8WU39 189 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 NTNG2Q96CW9 530 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 MTBPQ96DY7 904 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 HSPBAP1Q96EW2 488 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 WDYHV1Q96HA8 205 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 C18orf12Q96KH6 178 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 GSTO2Q9H4Y5 243 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 PLEKHF2Q9H8W4 249 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 NMRK1Q9NWW6 199 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 PSMC3IPQ9P2W1 217 aaPredicted RBP17.28■□□□□ 0.36
VPS35-202ENST00000561713 EMCNQ9ULC0 261 aa17.28■□□□□ 0.36
VPS35-202ENST00000561713 FRG2CA6NGY1 282 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 EEF1E1-BLOC1S5C9J1V9 151 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 UBFD1O14562 309 aaKnown RBP17.27■□□□□ 0.36
VPS35-202ENST00000561713 ACOX3O15254 700 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 EEF1E1O43324 174 aaKnown RBP17.27■□□□□ 0.36
VPS35-202ENST00000561713 ULK1O75385 1050 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 TIMP3P35625 211 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 PRKAA2P54646 552 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 TRA2BP62995 288 aaKnown RBP17.27■□□□□ 0.36
VPS35-202ENST00000561713 PRSS53Q2L4Q9 553 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 LGSNQ5TDP6 509 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 TRMT10CQ7L0Y3 403 aaKnown RBP17.27■□□□□ 0.36
VPS35-202ENST00000561713 CCNYL1Q8N7R7 359 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 C9orf106Q8NAJ2 232 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 ZNF675Q8TD23 568 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 ABTB1Q969K4 478 aaPredicted RBP17.27■□□□□ 0.36
VPS35-202ENST00000561713 L3HYPDHQ96EM0 354 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 FOLH1BQ9HBA9 442 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 MID1IP1Q9NPA3 183 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 RYDENQ9NUL5 291 aaKnown RBP17.27■□□□□ 0.36
VPS35-202ENST00000561713 PRODH2Q9UF12 536 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 FOXD3Q9UJU5 478 aaPredicted RBP17.27■□□□□ 0.36
VPS35-202ENST00000561713 PSME2Q9UL46 239 aa17.27■□□□□ 0.36
VPS35-202ENST00000561713 B4DXG7 233 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 REM1O75628 298 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 IL2RAP01589 272 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 IMPDH1P20839 514 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 ADSLP30566 484 aaPredicted RBP17.26■□□□□ 0.35
VPS35-202ENST00000561713 PPICP45877 212 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 SLCO1A2P46721 670 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 SRYQ05066 204 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 ZNF155Q12901 538 aaPredicted RBP17.26■□□□□ 0.35
VPS35-202ENST00000561713 SLC29A2Q14542 456 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 SPIN4Q56A73 249 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 NSUN5P2Q63ZY6 315 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 SLC30A6Q6NXT4 461 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 NUP54Q7Z3B4 507 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 KRTAP1-3Q8IUG1 177 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 PM20D2Q8IYS1 436 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 WDSUB1Q8N9V3 476 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 OR7G2Q8NG99 324 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 OR14L1PQ8NHC6 308 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 EFHD2Q96C19 240 aaPredicted RBP17.26■□□□□ 0.35
VPS35-202ENST00000561713 VSTM2LQ96N03 204 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 BTBD9Q96Q07 612 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 ADOQ96SZ5 270 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 TXLNGYQ9BZA5 131 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 C12orf65Q9H3J6 166 aaKnown RBP17.26■□□□□ 0.35
VPS35-202ENST00000561713 SENP1Q9P0U3 644 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 FBXL2Q9UKC9 423 aa17.26■□□□□ 0.35
VPS35-202ENST00000561713 GPR55Q9Y2T6 319 aaPredicted RBP17.26■□□□□ 0.35
VPS35-202ENST00000561713 POLR3HQ9Y535 204 aaPredicted RBP17.26■□□□□ 0.35
VPS35-202ENST00000561713 A0A1W2PPM1 405 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 SMIM23A6NLE4 172 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 H0Y3Z8 333 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 ERN1O75460 977 aaKnown RBP17.25■□□□□ 0.35
VPS35-202ENST00000561713 ENO1P06733 434 aaKnown RBP17.25■□□□□ 0.35
VPS35-202ENST00000561713 INHBBP09529 407 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 CT45A8P0DMV1 189 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 CT45A9P0DMV2 189 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 NAGAP17050 411 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 ERCC6LQ2NKX8 1250 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 CT45A2Q5DJT8 189 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 NHSL2Q5HYW2 709 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 OR5M10Q6IEU7 315 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 CLEC9AQ6UXN8 241 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 KIF18BQ86Y91 864 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 SLC22A9Q8IVM8 553 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 IFT20Q8IY31 132 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 FAM9CQ8IZT9 166 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 OR4N2Q8NGD1 307 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 COL21A1Q96P44 957 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 TUBA1CQ9BQE3 449 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 SHCBP1LQ9BZQ2 653 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 OR2B2Q9GZK3 357 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 TNFRSF12AQ9NP84 129 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 SLC35C2Q9NQQ7 365 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 GIMAP4Q9NUV9 329 aa17.25■□□□□ 0.35
VPS35-202ENST00000561713 WIF1Q9Y5W5 379 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms