RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 UBE2IP63279 158 aaKnown RBP5.09□□□□□ -1.59
VPS13C-209ENST00000560637 CD47Q08722 323 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 DMPKQ09013 629 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 MADCAM1Q13477 382 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 C1DQ13901 141 aaKnown RBP5.09□□□□□ -1.59
VPS13C-209ENST00000560637 GFOD2Q3B7J2 385 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 GXYLT1Q4G148 440 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 CARD17Q5XLA6 110 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 SLC48A1Q6P1K1 146 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 TMPRSS7Q7RTY8 843 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 TRIM46Q7Z4K8 759 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 PROSER1Q86XN7 944 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 LGI4Q8N135 537 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 OR7G2Q8NG99 324 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 OR52L1Q8NGH7 329 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 OR6K6Q8NGW6 343 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 DUSP19Q8WTR2 217 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 KLHL6Q8WZ60 621 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 TANKQ92844 425 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 OR7D2Q96RA2 312 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 TAPBPLQ9BX59 468 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 BHLHE41Q9C0J9 482 aaPredicted RBP5.09□□□□□ -1.59
VPS13C-209ENST00000560637 CDCP1Q9H5V8 836 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 CLMPQ9H6B4 373 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 COQ10BQ9H8M1 238 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 MKKSQ9NPJ1 570 aaPredicted RBP5.09□□□□□ -1.59
VPS13C-209ENST00000560637 SLAMF7Q9NQ25 335 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 SLC6A13Q9NSD5 602 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 TVP23BQ9NYZ1 205 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 DLGAP2Q9P1A6 1054 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 CFL2Q9Y281 166 aa5.09□□□□□ -1.59
VPS13C-209ENST00000560637 MED13LQ71F56 2210 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 COL4A3Q01955 1670 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 PMS2P1A4D2B8 440 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 J3KTA2 159 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 M0R129 80 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 HRKO00198 91 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 BRINP1O60477 761 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 FCMRO60667 390 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 PRAMEF2O60811 474 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 TIAF1O95411 115 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 C1QCP02747 245 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 IFI30P13284 250 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 ITGA2P17301 1181 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 GPR4P46093 362 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 POLE2P56282 527 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 LSM3P62310 102 aaKnown RBP5.09□□□□□ -1.6
VPS13C-209ENST00000560637 GUCA2AQ02747 115 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 SERTAD2Q14140 314 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 SNAPC1Q16533 368 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 CRB2Q5IJ48 1285 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 OGFOD2Q6N063 350 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 UBE2J2Q8N2K1 259 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 STX19Q8N4C7 294 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 ZNF527Q8NB42 609 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 PIK3C3Q8NEB9 887 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 OR51L1Q8NGJ5 315 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 OR14L1PQ8NHC6 308 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 FOXN4Q96NZ1 517 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 MESP1Q9BRJ9 268 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 IFT27Q9BW83 186 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 ACTRT3Q9BYD9 372 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 MMADHCQ9H3L0 296 aaPredicted RBP5.09□□□□□ -1.6
VPS13C-209ENST00000560637 CALML5Q9NZT1 146 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 MAN2B2Q9Y2E5 1009 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 PCDHGA7Q9Y5G6 932 aa5.09□□□□□ -1.6
VPS13C-209ENST00000560637 EPG5Q9HCE0 2579 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 FAM20BO75063 409 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 NR4A1P22736 598 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 IGFBP5P24593 272 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 PSMB9P28065 219 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 GPR3P46089 330 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 EEFSECP57772 596 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 C9orf135Q5VTT2 229 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 B3GNTL1Q67FW5 361 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 FAM71E1Q6IPT2 247 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 TMEM154Q6P9G4 183 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 C6orf89Q6UWU4 347 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 MED25Q71SY5 747 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 LUZP2Q86TE4 346 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 IGFN1Q86VF2 1251 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 KLHDC8BQ8IXV7 354 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 CA13Q8N1Q1 262 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 SCAIQ8N9R8 606 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 OR52N2Q8NGI0 321 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 ASB9Q96DX5 294 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 C9orf16Q9BUW7 83 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 TRIM2Q9C040 744 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 IRF2BPLQ9H1B7 796 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 SEC61A2Q9H9S3 476 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 KRCC1Q9NPI7 259 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 FARSAQ9Y285 508 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 NYNRINQ9P2P1 1898 aaKnown RBP5.08□□□□□ -1.6
VPS13C-209ENST00000560637 CCDC187A0A096LP49 1063 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 CCDC163A0A0D9SF12 145 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 TRABD2BA6NFA1 517 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 KLK8O60259 260 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 HCN1O60741 890 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 PRDX6P30041 224 aa5.08□□□□□ -1.6
VPS13C-209ENST00000560637 TMED10P49755 219 aaKnown RBP5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms