RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 TMCC3Q9ULS5 477 aa16.66■□□□□ 0.26
SNX1-208ENST00000559844 PIEZO1Q92508 2521 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 SPAARA0A1B0GVQ0 90 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 DUXAA6NLW8 204 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 PCDH17O14917 1159 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 OXSR1O95747 527 aaPredicted RBP16.65■□□□□ 0.26
SNX1-208ENST00000559844 EIF2S1P05198 315 aaKnown RBP16.65■□□□□ 0.26
SNX1-208ENST00000559844 XKP51811 444 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 CFHR1Q03591 330 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 GPAT3Q53EU6 434 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 ATAD3BQ5T9A4 648 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 FAM92BQ6ZTR7 304 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 B3GNT8Q7Z7M8 397 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 ERI1Q8IV48 349 aaKnown RBP16.65■□□□□ 0.26
SNX1-208ENST00000559844 PARP8Q8N3A8 854 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 CSNK1A1LQ8N752 337 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 TGM7Q96PF1 710 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 YIPF4Q9BSR8 244 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 ACTRT3Q9BYD9 372 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 CCNB1IP1Q9NPC3 277 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 TOR4AQ9NXH8 423 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 NTMQ9P121 344 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 KLHL3Q9UH77 587 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 SLC9A8Q9Y2E8 581 aa16.65■□□□□ 0.26
SNX1-208ENST00000559844 AGR2O95994 175 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 SLC5A2P31639 672 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 GGT2P36268 569 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 ILKQ13418 452 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 RSPO4Q2I0M5 234 aaPredicted RBP16.64■□□□□ 0.25
SNX1-208ENST00000559844 PLXDC1Q8IUK5 500 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 ISOC1Q96CN7 298 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 DHRS1Q96LJ7 313 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 MS4A4EQ96PG1 132 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 GFM1Q96RP9 751 aaKnown RBP16.64■□□□□ 0.25
SNX1-208ENST00000559844 RAB33BQ9H082 229 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 TRIM45Q9H8W5 580 aaPredicted RBP16.64■□□□□ 0.25
SNX1-208ENST00000559844 TMEM9Q9P0T7 183 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 A0A1W2PS29 197 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 NOL3O60936 208 aaKnown RBP16.64■□□□□ 0.25
SNX1-208ENST00000559844 TRMUO75648 421 aaKnown RBP16.64■□□□□ 0.25
SNX1-208ENST00000559844 CHRM4P08173 479 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 CBLP22681 906 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 DCKP27707 260 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 PTGER1P34995 402 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 NOVA1P51513 510 aaKnown RBP16.64■□□□□ 0.25
SNX1-208ENST00000559844 FUT5Q11128 374 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 TCTN3Q6NUS6 607 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 WDR74Q6RFH5 385 aaPredicted RBP16.64■□□□□ 0.25
SNX1-208ENST00000559844 DEPDC4Q8N2C3 294 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 OR13F1Q8NGS4 319 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 C16orf58Q96GQ5 468 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 ZDHHC12Q96GR4 267 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 TRNT1Q96Q11 434 aaKnown RBP16.64■□□□□ 0.25
SNX1-208ENST00000559844 NIPSNAP1Q9BPW8 284 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 PINK1Q9BXM7 581 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 RLIMQ9NVW2 624 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 PTGFRNQ9P2B2 879 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 ACAD8Q9UKU7 415 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 PCDHGA6Q9Y5G7 932 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 PCDHGA1Q9Y5H4 931 aa16.64■□□□□ 0.25
SNX1-208ENST00000559844 COL27A1Q8IZC6 1860 aaPredicted RBP16.63■□□□□ 0.25
SNX1-208ENST00000559844 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 FAAHO00519 579 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 SEC14L2O76054 403 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 SLITRK5O94991 958 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 H1F0P07305 194 aaKnown RBP16.63■□□□□ 0.25
SNX1-208ENST00000559844 EPHA2P29317 976 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 FMO3P31513 532 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 PLA2G5P39877 138 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 MAN2A2P49641 1150 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 SIM1P81133 766 aaPredicted RBP16.63■□□□□ 0.25
SNX1-208ENST00000559844 TEKQ02763 1124 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 SQSTM1Q13501 440 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 DCST1Q5T197 706 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 XAF1Q6GPH4 301 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 DEF8Q6ZN54 512 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 TMPRSS9Q7Z410 1059 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 OR9Q2Q8NGE9 314 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 VANGL1Q8TAA9 524 aaPredicted RBP16.63■□□□□ 0.25
SNX1-208ENST00000559844 ADAMTS15Q8TE58 950 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 IPCEF1Q8WWN9 437 aaPredicted RBP16.63■□□□□ 0.25
SNX1-208ENST00000559844 KAT2AQ92830 837 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 GIMAP5Q96F15 307 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 DUSP21Q9H596 190 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 NMNAT1Q9HAN9 279 aaPredicted RBP16.63■□□□□ 0.25
SNX1-208ENST00000559844 GIN1Q9NXP7 522 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 EPHA6Q9UF33 1036 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 PCDHGB1Q9Y5G3 927 aa16.63■□□□□ 0.25
SNX1-208ENST00000559844 MN1Q10571 1320 aaPredicted RBP16.63■□□□□ 0.25
SNX1-208ENST00000559844 D6RAR5 112 aa16.62■□□□□ 0.25
SNX1-208ENST00000559844 PTGES3LE9PB15 166 aa16.62■□□□□ 0.25
SNX1-208ENST00000559844 NTN3O00634 580 aaPredicted RBP16.62■□□□□ 0.25
SNX1-208ENST00000559844 FFAR1O14842 300 aa16.62■□□□□ 0.25
SNX1-208ENST00000559844 GALR3O60755 368 aaPredicted RBP16.62■□□□□ 0.25
SNX1-208ENST00000559844 ADAP00813 363 aa16.62■□□□□ 0.25
SNX1-208ENST00000559844 HTR1AP08908 422 aa16.62■□□□□ 0.25
SNX1-208ENST00000559844 CEACAM1P13688 526 aa16.62■□□□□ 0.25
SNX1-208ENST00000559844 CPMP14384 443 aa16.62■□□□□ 0.25
SNX1-208ENST00000559844 PORP16435 677 aaPredicted RBP16.62■□□□□ 0.25
SNX1-208ENST00000559844 SNRPNP63162 240 aaKnown RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms