RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 A0A1W2PNV4 684 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 LINC01387J3KSC0 135 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 CTIFO43310 598 aaKnown RBP8.31□□□□□ -1.08
HDDC3-204ENST00000559834 ZIC3O60481 467 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 SMNDC1O75940 238 aaKnown RBP eCLIP8.31□□□□□ -1.08
HDDC3-204ENST00000559834 PDYNP01213 254 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 ALDOAP04075 364 aaKnown RBP8.31□□□□□ -1.08
HDDC3-204ENST00000559834 HEXAP06865 529 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 INHBAP08476 426 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 PCSK2P16519 638 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 ZNF708P17019 499 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 DPP4P27487 766 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 IL12BP29460 328 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 MPIP34949 423 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 CPOXP36551 454 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 CD79BP40259 229 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 MC3RP41968 323 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 PNLIPRP2P54317 469 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 DSCR4P56555 118 aaPredicted RBP8.31□□□□□ -1.08
HDDC3-204ENST00000559834 C2orf54Q08AI8 447 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 FAM27E3Q08E93 113 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 GALNT1Q10472 559 aaPredicted RBP8.31□□□□□ -1.08
HDDC3-204ENST00000559834 TRAF3Q13114 568 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 FGFBP1Q14512 234 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 ERCC6LQ2NKX8 1250 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 PRSS57Q6UWY2 283 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 ZDHHC24Q6UX98 284 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 LARP4Q71RC2 724 aaKnown RBP eCLIP8.31□□□□□ -1.08
HDDC3-204ENST00000559834 CCDC116Q8IYX3 515 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 PLD6Q8N2A8 252 aaKnown RBP8.31□□□□□ -1.08
HDDC3-204ENST00000559834 MEIOBQ8N635 442 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 ZNF675Q8TD23 568 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 ZNF592Q92610 1267 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 CNRIP1Q96F85 164 aaPredicted RBP8.31□□□□□ -1.08
HDDC3-204ENST00000559834 PGM2Q96G03 612 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 ZNF681Q96N22 645 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 WFIKKN1Q96NZ8 548 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 NSUN5Q96P11 429 aaKnown RBP8.31□□□□□ -1.08
HDDC3-204ENST00000559834 FAM111AQ96PZ2 611 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 MRPL57Q9BQC6 102 aaKnown RBP8.31□□□□□ -1.08
HDDC3-204ENST00000559834 MED18Q9BUE0 208 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 G6PC3Q9BUM1 346 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 GRPEL1Q9HAV7 217 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 ZBTB26Q9HCK0 441 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 FARSBQ9NSD9 589 aaKnown RBP8.31□□□□□ -1.08
HDDC3-204ENST00000559834 GIMAP4Q9NUV9 329 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 EHD3Q9NZN3 535 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 VPS29Q9UBQ0 182 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 FBXL2Q9UKC9 423 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 TESMINQ9Y4I5 508 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 WIF1Q9Y5W5 379 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 KIAA1549Q9HCM3 1950 aa8.31□□□□□ -1.08
HDDC3-204ENST00000559834 MED12Q93074 2177 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 A0A1W2PPR1 153 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 SLC22A20A6NK97 555 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 C16orf97H3BN30 126 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 HCRTR2O43614 444 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 TNFRSF21O75509 655 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 TNFSF13O75888 250 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 TGM6O95932 706 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 KRT6AP02538 564 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 KRT6BP04259 564 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 HSD3B1P14060 373 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 GRK2P25098 689 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 HSD3B2P26439 372 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 CASQ1P31415 396 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 KCNJ5P48544 419 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 KRT6CP48668 564 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 CLK3P49761 638 aaKnown RBP8.3□□□□□ -1.08
HDDC3-204ENST00000559834 SERPINB9P50453 376 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 CLDN18P56856 261 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 MRPS35P82673 323 aaKnown RBP8.3□□□□□ -1.08
HDDC3-204ENST00000559834 HEPACAMQ14CZ8 416 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 TRADDQ15628 312 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 LTB4RQ15722 352 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 ACKR1Q16570 336 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 Q5PR19 223 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 OR5M10Q6IEU7 315 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 KRTAP1-3Q8IUG1 177 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 C1orf52Q8N6N3 182 aaKnown RBP8.3□□□□□ -1.08
HDDC3-204ENST00000559834 CNEP1R1Q8N9A8 125 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 SIMC1Q8NDZ2 872 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 OR4K17Q8NGC6 315 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 NUDT8Q8WV74 236 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 STARD4Q96DR4 205 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 ARSGQ96EG1 525 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 BTBD9Q96Q07 612 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 SHCBP1LQ9BZQ2 653 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 TSPYL1Q9H0U9 437 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 STMN4Q9H169 189 aaPredicted RBP8.3□□□□□ -1.08
HDDC3-204ENST00000559834 MRPL46Q9H2W6 279 aaKnown RBP8.3□□□□□ -1.08
HDDC3-204ENST00000559834 ACSS3Q9H6R3 686 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 PTGES2Q9H7Z7 377 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 TAS2R9Q9NYW1 312 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 C6orf203Q9P0P8 240 aaPredicted RBP8.3□□□□□ -1.08
HDDC3-204ENST00000559834 SENP1Q9P0U3 644 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 PPP4R1LQ9P1A2 415 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 XPR1Q9UBH6 696 aa8.3□□□□□ -1.08
HDDC3-204ENST00000559834 STOML1Q9UBI4 398 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms