RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 DUSP2Q05923 314 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 TOR2AQ5JU69 321 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 HIST2H2AA3Q6FI13 130 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 NKAIN4Q8IVV8 208 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 CCDC28AQ8IWP9 274 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 FIBINQ8TAL6 211 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 MSLNLQ96KJ4 702 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 MAGEB10Q96LZ2 347 aaPredicted RBP11.61□□□□□ -0.55
LDLR-205ENST00000557933 LYSMD1Q96S90 227 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 ATF6BQ99941 703 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 DPCDQ9BVM2 203 aaPredicted RBP11.61□□□□□ -0.55
LDLR-205ENST00000557933 RNF32Q9H0A6 362 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 ABCG5Q9H222 651 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 DDX31Q9H8H2 851 aaKnown RBP11.61□□□□□ -0.55
LDLR-205ENST00000557933 CAPN10Q9HC96 672 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 SPG21Q9NZD8 308 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 PTGFRNQ9P2B2 879 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 KCND3Q9UK17 655 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 MGAT4AQ9UM21 535 aa11.61□□□□□ -0.55
LDLR-205ENST00000557933 TCF20Q9UGU0 1960 aaKnown RBP11.61□□□□□ -0.55
LDLR-205ENST00000557933 ABHD14A-ACY1A0A1B0GW23 586 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 SLC5A10A0PJK1 596 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 PRR23AA6NEV1 266 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 FAM170BA6NMN3 283 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 MMP20O60882 483 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 EFEMP2O95967 443 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 TIMP1P01033 207 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 IL1AP01583 271 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 GYPBP06028 91 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 RB1P06400 928 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 CHRM4P08173 479 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 CPEP16870 476 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 UQCRC2P22695 453 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 SHC1P29353 583 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 TRIM23P36406 574 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 ACVR1BP36896 505 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 RPS5P46782 204 aaKnown RBP11.6□□□□□ -0.55
LDLR-205ENST00000557933 RPL6Q02878 288 aaKnown RBP11.6□□□□□ -0.55
LDLR-205ENST00000557933 LY6G5CQ5SRR4 150 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 HENMT1Q5T8I9 393 aaKnown RBP11.6□□□□□ -0.55
LDLR-205ENST00000557933 NXPE4Q6UWF7 544 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 TMEM91Q6ZNR0 172 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 GDPD1Q8N9F7 314 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 COL26A1Q96A83 441 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 MSANTD3Q96H12 275 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 ORAI3Q9BRQ5 295 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 C6orf106Q9H6K1 298 aaPredicted RBP11.6□□□□□ -0.55
LDLR-205ENST00000557933 PPP1R3EQ9H7J1 279 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 SLC28A3Q9HAS3 691 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 FZD3Q9NPG1 666 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 ING3Q9NXR8 418 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 MAPRE3Q9UPY8 281 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 MGAT4BQ9UQ53 548 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 SF3B6Q9Y3B4 125 aaKnown RBP11.6□□□□□ -0.55
LDLR-205ENST00000557933 HEATR5BQ9P2D3 2071 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 NUPL2O15504 423 aaKnown RBP11.6□□□□□ -0.55
LDLR-205ENST00000557933 OR1F1O43749 312 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 DPM1O60762 260 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 TYRP14679 529 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 ENDOUP21128 410 aaKnown RBP11.6□□□□□ -0.55
LDLR-205ENST00000557933 ERP29P30040 261 aaKnown RBP11.6□□□□□ -0.55
LDLR-205ENST00000557933 MAPK8P45983 427 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 RFX3P48380 749 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 KCNJ5P48544 419 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 TAS2R41P59536 307 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 RRAS2P62070 204 aaPredicted RBP11.6□□□□□ -0.55
LDLR-205ENST00000557933 SLC3A1Q07837 685 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 CAMK1Q14012 370 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 GPR176Q14439 515 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 PLK5Q496M5 336 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 ARL9Q6T311 187 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 ZNF783Q6ZMS7 281 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 CAMKMTQ7Z624 323 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 SLC9B2Q86UD5 537 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 ING5Q8WYH8 240 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 SMG7Q92540 1137 aaKnown RBP11.6□□□□□ -0.55
LDLR-205ENST00000557933 ZNF354BQ96LW1 612 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 WDFY2Q96P53 400 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 CHIAQ9BZP6 476 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 MKRN2Q9H000 416 aaKnown RBP11.6□□□□□ -0.55
LDLR-205ENST00000557933 SIRT3Q9NTG7 399 aaPredicted RBP11.6□□□□□ -0.55
LDLR-205ENST00000557933 STMN3Q9NZ72 180 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 DIMT1Q9UNQ2 313 aaKnown RBP11.6□□□□□ -0.55
LDLR-205ENST00000557933 PTPRSQ13332 1948 aa11.6□□□□□ -0.55
LDLR-205ENST00000557933 FAAHO00519 579 aa11.59□□□□□ -0.55
LDLR-205ENST00000557933 NARSO43776 548 aaKnown RBP11.59□□□□□ -0.55
LDLR-205ENST00000557933 UGDHO60701 494 aa11.59□□□□□ -0.55
LDLR-205ENST00000557933 POP7O75817 140 aaKnown RBP11.59□□□□□ -0.55
LDLR-205ENST00000557933 ABLIM3O94929 683 aa11.59□□□□□ -0.55
LDLR-205ENST00000557933 EIF4EP06730 217 aaKnown RBP11.59□□□□□ -0.55
LDLR-205ENST00000557933 VSX2P58304 361 aaPredicted RBP11.59□□□□□ -0.55
LDLR-205ENST00000557933 NTHL1P78549 312 aa11.59□□□□□ -0.55
LDLR-205ENST00000557933 CDKL4Q5MAI5 379 aa11.59□□□□□ -0.55
LDLR-205ENST00000557933 PRAMEF14Q5SWL7 426 aa11.59□□□□□ -0.55
LDLR-205ENST00000557933 PRAMEF13Q5VWM6 474 aa11.59□□□□□ -0.55
LDLR-205ENST00000557933 TMEM107Q6UX40 140 aa11.59□□□□□ -0.55
LDLR-205ENST00000557933 RRM2BQ7LG56 351 aa11.59□□□□□ -0.55
LDLR-205ENST00000557933 PEX5LQ8IYB4 626 aa11.59□□□□□ -0.55
LDLR-205ENST00000557933 GOT1L1Q8NHS2 421 aaPredicted RBP11.59□□□□□ -0.55
LDLR-205ENST00000557933 TEX47Q8TBZ9 253 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms