RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 ALOX15P16050 662 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-220ENST00000556486 CRABP2P29373 138 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 SERPINB3P29508 390 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 TLX1P31314 330 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-220ENST00000556486 CEACAM8P31997 349 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-220ENST00000556486 TIMP3P35625 211 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 BUD31P41223 144 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-220ENST00000556486 PAFAH1B1P43034 410 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 ZNF136P52737 540 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 GPX6P59796 221 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 KCNJ2P63252 427 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 ID2Q02363 134 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 DLG1Q12959 904 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 CALCOCO2Q13137 446 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 NAB1Q13506 487 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 EBPQ15125 230 aaKnown RBP9.14□□□□□ -0.95
SCFD1-220ENST00000556486 LIPJQ5W064 366 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 SHISA2Q6UWI4 295 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 DGAT2L6Q6ZPD8 337 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 C3orf62Q6ZUJ4 267 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 MAPK1IP1LQ8NDC0 245 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 C17orf47Q8NEP4 570 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 TP53INP1Q96A56 240 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 LRRC46Q96FV0 321 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 JSRP1Q96MG2 331 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-220ENST00000556486 NAPGQ99747 312 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-220ENST00000556486 WWTR1Q9GZV5 400 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 OR51B5Q9H339 312 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 UBQLN3Q9H347 655 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 ALG9Q9H6U8 611 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 LYARQ9NX58 379 aaKnown RBP9.14□□□□□ -0.95
SCFD1-220ENST00000556486 GRHL1Q9NZI5 618 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 OPTCQ9UBM4 332 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 ZNF629Q9UEG4 869 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-220ENST00000556486 MTRF1LQ9UGC7 380 aaKnown RBP9.14□□□□□ -0.95
SCFD1-220ENST00000556486 ASB4Q9Y574 426 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 ARID1AO14497 2285 aa9.14□□□□□ -0.95
SCFD1-220ENST00000556486 C15orf38-AP3S2A0A0A6YYH1 394 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 IQANK1A0A1B0GTG1 560 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 SYCE1LA8MT33 242 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 AHRRA9YTQ3 701 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 FOXE1O00358 373 aaPredicted RBP9.13□□□□□ -0.95
SCFD1-220ENST00000556486 SEMA3DO95025 777 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 SNX4O95219 450 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 EPPINO95925 133 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 LTA4HP09960 611 aaKnown RBP9.13□□□□□ -0.95
SCFD1-220ENST00000556486 SLC35E2P0CK97 266 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 GRK2P25098 689 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 PTX3P26022 381 aaPredicted RBP9.13□□□□□ -0.95
SCFD1-220ENST00000556486 BSGP35613 385 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 NR1H2P55055 460 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 HNRNPH2P55795 449 aaKnown RBP9.13□□□□□ -0.95
SCFD1-220ENST00000556486 GNG11P61952 73 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 RPS6KA2Q15349 733 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 KBTBD12Q3ZCT8 623 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 ACSF3Q4G176 576 aaPredicted RBP9.13□□□□□ -0.95
SCFD1-220ENST00000556486 NHSL2Q5HYW2 709 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 C18orf63Q68DL7 685 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 PLXDC2Q6UX71 529 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 RNF111Q6ZNA4 994 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 Q6ZS46 218 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 SLC29A4Q7RTT9 530 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 MAATS1Q7Z4T9 603 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 TBC1D1Q86TI0 1168 aaPredicted RBP9.13□□□□□ -0.95
SCFD1-220ENST00000556486 OR4N5Q8IXE1 308 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 CENPLQ8N0S6 344 aaPredicted RBP9.13□□□□□ -0.95
SCFD1-220ENST00000556486 OR10G3Q8NGC4 313 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 RIT1Q92963 219 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 FAM46AQ96IP4 442 aaKnown RBP9.13□□□□□ -0.95
SCFD1-220ENST00000556486 LRGUKQ96M69 825 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 UBTD1Q9HAC8 227 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 SAYSD1Q9NPB0 183 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 C6orf203Q9P0P8 240 aaPredicted RBP9.13□□□□□ -0.95
SCFD1-220ENST00000556486 FETUBQ9UGM5 382 aa9.13□□□□□ -0.95
SCFD1-220ENST00000556486 SONP18583 2426 aaKnown RBP9.13□□□□□ -0.95
SCFD1-220ENST00000556486 A0A1W2PR48 441 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 CAPN14A8MX76 684 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 UBXN8O00124 270 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 SAP18O00422 153 aaKnown RBP9.12□□□□□ -0.95
SCFD1-220ENST00000556486 GNB5O14775 395 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 TMPRSS11DO60235 418 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 CRLF1O75462 422 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 GOSR1O95249 250 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 IL33O95760 270 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 IGHA1P01876 353 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 HPNP05981 417 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 NR2F6P10588 404 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 PCNAP12004 261 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 STX2P32856 288 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 TMED10P49755 219 aaKnown RBP9.12□□□□□ -0.95
SCFD1-220ENST00000556486 RAP1GDS1P52306 607 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 ALDH18A1P54886 795 aaKnown RBP9.12□□□□□ -0.95
SCFD1-220ENST00000556486 SCAND1P57086 179 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 HERVK_113P63132 956 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 ERVK-8P63133 956 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 CAV1Q03135 178 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 CRYZQ08257 329 aaKnown RBP9.12□□□□□ -0.95
SCFD1-220ENST00000556486 FUT7Q11130 342 aa9.12□□□□□ -0.95
SCFD1-220ENST00000556486 SF3B4Q15427 424 aaKnown RBP eCLIP9.12□□□□□ -0.958e-8■■■□□ 18.5
SCFD1-220ENST00000556486 FNDC7Q5VTL7 733 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms