RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 LCN1P1Q5VSP4 162 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 FAM71E1Q6IPT2 247 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 MTFR2Q6P444 385 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 CALHM3Q86XJ0 350 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 MVB12BQ9H7P6 319 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 TNFRSF10DQ9UBN6 386 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 ACSL5Q9ULC5 683 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 MYO16Q9Y6X6 1858 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 URADA6NGE7 173 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 ARHGEF15O94989 841 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 HNRNPA1P09651 372 aaKnown RBP eCLIP14.01□□□□□ -0.17
CUX1-215ENST00000556210 CLEC2LP0C7M8 214 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 ZNF888P0CJ79 500 aaPredicted RBP14.01□□□□□ -0.17
CUX1-215ENST00000556210 GRPRP30550 384 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 AHRP35869 848 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 AMZ1Q400G9 498 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 LINC00299Q6ZSB3 139 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 MSANTD1Q6ZTZ1 278 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 ZNF547Q8IVP9 402 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 RLN3Q8WXF3 142 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 MED20Q9H944 212 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 PSORS1C1Q9UIG5 152 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 ZNF222Q9UK12 451 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 HSPB11Q9Y547 144 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 SCN2AQ99250 2005 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 LOC285556D6RIA3 1793 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 TRIM64A6NGJ6 449 aa14□□□□□ -0.17
CUX1-215ENST00000556210 SCN2BO60939 215 aa14□□□□□ -0.17
CUX1-215ENST00000556210 GABRA3P34903 492 aa14□□□□□ -0.17
CUX1-215ENST00000556210 SNRPD2P62316 118 aaKnown RBP14□□□□□ -0.17
CUX1-215ENST00000556210 ST3GAL3Q11203 375 aa14□□□□□ -0.17
CUX1-215ENST00000556210 PLAG1Q6DJT9 500 aa14□□□□□ -0.17
CUX1-215ENST00000556210 LACC1Q8IV20 430 aa14□□□□□ -0.17
CUX1-215ENST00000556210 ANKRD53Q8N9V6 530 aa14□□□□□ -0.17
CUX1-215ENST00000556210 RPP25Q9BUL9 199 aaKnown RBP14□□□□□ -0.17
CUX1-215ENST00000556210 MND1Q9BWT6 205 aa14□□□□□ -0.17
CUX1-215ENST00000556210 SPRTNQ9H040 489 aaPredicted RBP14□□□□□ -0.17
CUX1-215ENST00000556210 RP1P56715 2156 aa14□□□□□ -0.17
CUX1-215ENST00000556210 A0A1W2PS29 197 aa14□□□□□ -0.17
CUX1-215ENST00000556210 FAM171A2A8MVW0 826 aa14□□□□□ -0.17
CUX1-215ENST00000556210 LRRTM2O43300 516 aa14□□□□□ -0.17
CUX1-215ENST00000556210 WBP4O75554 376 aaKnown RBP14□□□□□ -0.17
CUX1-215ENST00000556210 SHC2P98077 582 aa14□□□□□ -0.17
CUX1-215ENST00000556210 ZNF91Q05481 1191 aa14□□□□□ -0.17
CUX1-215ENST00000556210 PRDX1Q06830 199 aaKnown RBP14□□□□□ -0.17
CUX1-215ENST00000556210 ERV3-1Q14264 604 aa14□□□□□ -0.17
CUX1-215ENST00000556210 PLBD1Q6P4A8 553 aa14□□□□□ -0.17
CUX1-215ENST00000556210 ZNF367Q7RTV3 350 aa14□□□□□ -0.17
CUX1-215ENST00000556210 SLC46A3Q7Z3Q1 461 aa14□□□□□ -0.17
CUX1-215ENST00000556210 CDH24Q86UP0 819 aa14□□□□□ -0.17
CUX1-215ENST00000556210 DENND6BQ8NEG7 585 aa14□□□□□ -0.17
CUX1-215ENST00000556210 DPH1Q9BZG8 443 aa14□□□□□ -0.17
CUX1-215ENST00000556210 HOXD1Q9GZZ0 328 aa14□□□□□ -0.17
CUX1-215ENST00000556210 C1GALT1Q9NS00 363 aa14□□□□□ -0.17
CUX1-215ENST00000556210 MSRAQ9UJ68 235 aa14□□□□□ -0.17
CUX1-215ENST00000556210 SIP14410 1827 aa14□□□□□ -0.17
CUX1-215ENST00000556210 NYNRINQ9P2P1 1898 aaKnown RBP14□□□□□ -0.17
CUX1-215ENST00000556210 FAM86C2PA6NEL3 165 aa14□□□□□ -0.17
CUX1-215ENST00000556210 POM121BA6NF01 834 aa14□□□□□ -0.17
CUX1-215ENST00000556210 RPP14O95059 124 aaKnown RBP14□□□□□ -0.17
CUX1-215ENST00000556210 HOXA9P31269 272 aa14□□□□□ -0.17
CUX1-215ENST00000556210 SDC2P34741 201 aa14□□□□□ -0.17
CUX1-215ENST00000556210 BNC1Q01954 994 aa14□□□□□ -0.17
CUX1-215ENST00000556210 EXOSC7Q15024 291 aaKnown RBP14□□□□□ -0.17
CUX1-215ENST00000556210 SLC30A8Q8IWU4 369 aa14□□□□□ -0.17
CUX1-215ENST00000556210 AP3S1Q92572 193 aa14□□□□□ -0.17
CUX1-215ENST00000556210 TMEM27Q9HBJ8 222 aa14□□□□□ -0.17
CUX1-215ENST00000556210 GVINP1Q7Z2Y8 2422 aa14□□□□□ -0.17
CUX1-215ENST00000556210 A0A1B0GVT2 93 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 GTPBP1O00178 669 aaKnown RBP13.99□□□□□ -0.17
CUX1-215ENST00000556210 PLD2O14939 933 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 NCR1O76036 304 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 KCNK2O95069 426 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 NAA10P41227 235 aaPredicted RBP13.99□□□□□ -0.17
CUX1-215ENST00000556210 RPS21P63220 83 aaKnown RBP13.99□□□□□ -0.17
CUX1-215ENST00000556210 EIF4HQ15056 248 aaKnown RBP13.99□□□□□ -0.17
CUX1-215ENST00000556210 FAAH2Q6GMR7 532 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 OR4C6Q8NH72 309 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 OR5K2Q8NHB8 316 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 ZG16BQ96DA0 208 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 RSPRY1Q96DX4 576 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 MRGPRX3Q96LB0 322 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 SAMD8Q96LT4 415 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 ZFR2Q9UPR6 939 aaKnown RBP13.99□□□□□ -0.17
CUX1-215ENST00000556210 FAAHO00519 579 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 NOS1APO75052 506 aaPredicted RBP13.99□□□□□ -0.17
CUX1-215ENST00000556210 MAN2A2P49641 1150 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 OR4K14Q8NGD5 310 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 OR2M4Q96R27 311 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 MKRN2Q9H000 416 aaKnown RBP13.99□□□□□ -0.17
CUX1-215ENST00000556210 TMEM168Q9H0V1 697 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 MCUBQ9NWR8 336 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 PCYT1BQ9Y5K3 369 aaPredicted RBP13.99□□□□□ -0.17
CUX1-215ENST00000556210 A0A1W2PQL4 384 aaPredicted RBP13.99□□□□□ -0.17
CUX1-215ENST00000556210 MEIOCA2RUB1 952 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 OR2W5A6NFC9 320 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 CENPBD1B2RD01 187 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 JUNDP17535 347 aa13.99□□□□□ -0.17
CUX1-215ENST00000556210 HIST1H1TP22492 207 aaPredicted RBP13.99□□□□□ -0.17
CUX1-215ENST00000556210 ACADLP28330 430 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms