RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 C3P1Q6ZMU1 363 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 CD163Q86VB7 1156 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 DOLPP1Q86YN1 238 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 KRTCAP2Q8N6L1 136 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 OR4N2Q8NGD1 307 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 FAM57AQ8TBR7 257 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 NTNG2Q96CW9 530 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 SLC35A4Q96G79 324 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 COL21A1Q96P44 957 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 PHF12Q96QT6 1004 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 ADOQ96SZ5 270 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 OSBPL11Q9BXB4 747 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 NUF2Q9BZD4 464 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 AKTIPQ9H8T0 292 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 EQTNQ9NQ60 294 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 ACSS1Q9NUB1 689 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-219ENST00000555563 PNPOQ9NVS9 261 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 ASIC5Q9NY37 505 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 NOP53Q9NZM5 478 aaKnown RBP12.57□□□□□ -0.4
SHMT2-219ENST00000555563 SUCOQ9UBS9 1254 aaKnown RBP12.57□□□□□ -0.4
SHMT2-219ENST00000555563 B4GALT7Q9UBV7 327 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 PLEKHB1Q9UF11 243 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-219ENST00000555563 OR10H1Q9Y4A9 318 aa12.57□□□□□ -0.4
SHMT2-219ENST00000555563 PRAMEF25A6NGN4 478 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 OR6C70A6NIJ9 312 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 PRRG2O14669 202 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 TSPAN2O60636 221 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 ABCB7O75027 752 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 SNNO75324 88 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-219ENST00000555563 REM1O75628 298 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 SNX4O95219 450 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 LAMP1P11279 417 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 ENDOUP21128 410 aaKnown RBP12.56□□□□□ -0.4
SHMT2-219ENST00000555563 IL12BP29460 328 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 PTGDSP41222 190 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 MANFP55145 182 aaKnown RBP12.56□□□□□ -0.4
SHMT2-219ENST00000555563 PSPHP78330 225 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 TTMPQ5BVD1 217 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 TMEM198Q66K66 360 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 TMEM81Q6P7N7 255 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 PAOXQ6QHF9 649 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 NCCRP1Q6ZVX7 275 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-219ENST00000555563 LARP4Q71RC2 724 aaKnown RBP eCLIP12.56□□□□□ -0.4
SHMT2-219ENST00000555563 TRILQ7L0X0 811 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 NUP54Q7Z3B4 507 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 SZRD1Q7Z422 152 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 PACS2Q86VP3 889 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 RAB3IL1Q8TBN0 382 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 NUDT8Q8WV74 236 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 EFHD2Q96C19 240 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-219ENST00000555563 TMEM41AQ96HV5 264 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 MS4A4EQ96PG1 132 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 LMF2Q9BU23 707 aaKnown RBP12.56□□□□□ -0.4
SHMT2-219ENST00000555563 SLC6A15Q9H2J7 730 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 MEAF6Q9HAF1 191 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 GALNT9Q9HCQ5 603 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 SIRT3Q9NTG7 399 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-219ENST00000555563 KLRF1Q9NZS2 232 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 MARCOQ9UEW3 520 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-219ENST00000555563 EIF3LQ9Y262 564 aaKnown RBP12.56□□□□□ -0.4
SHMT2-219ENST00000555563 C15orf41Q9Y2V0 281 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 MEMO1Q9Y316 297 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 HRH3Q9Y5N1 445 aa12.56□□□□□ -0.4
SHMT2-219ENST00000555563 TRGV5A0A0B4J1U4 118 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 NPIPA2E9PIF3 369 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 NPIPA3F8WFD2 350 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 ICOSLGO75144 302 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 ESRRAP11474 423 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-219ENST00000555563 DDX5P17844 614 aaKnown RBP12.55□□□□□ -0.4
SHMT2-219ENST00000555563 PRPS1L1P21108 318 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 GDF1P27539 372 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 KRT20P35900 424 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 DIO3P55073 304 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 C21orf58P58505 322 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 ADORA2A-AS1P86434 159 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 SLC10A1Q14973 349 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 ZNHIT3Q15649 155 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-219ENST00000555563 SMU1Q2TAY7 513 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 CPTPQ5TA50 214 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 HIST2H2BCQ6DN03 193 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 MTFR2Q6P444 385 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 ANGPTL8Q6UXH0 198 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 MAMDC2Q7Z304 686 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-219ENST00000555563 RIMKLAQ8IXN7 391 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 ITLN2Q8WWU7 325 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-219ENST00000555563 TMCO6Q96DC7 493 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 ATP6V1G3Q96LB4 118 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 UBQLN3Q9H347 655 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 LDAHQ9H6V9 325 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 Q9N2J8 555 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 ATAD3AQ9NVI7 634 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 THAP1Q9NVV9 213 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 ARGLU1Q9NWB6 273 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-219ENST00000555563 QPCTLQ9NXS2 382 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 NTMQ9P121 344 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 SPRR3Q9UBC9 169 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 TNFRSF10DQ9UBN6 386 aa12.55□□□□□ -0.4
SHMT2-219ENST00000555563 DOPEY1Q5JWR5 2465 aa12.54□□□□□ -0.4
SHMT2-219ENST00000555563 ICE1Q9Y2F5 2266 aa12.54□□□□□ -0.4
SHMT2-219ENST00000555563 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms