RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 FOLR3P41439 243 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 RFX3P48380 749 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 ANXA11P50995 505 aaKnown RBP9.47□□□□□ -0.89
SRP54-208ENST00000555557 CLCN2P51788 898 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 GPR143P51810 404 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 PCBP3P57721 371 aaKnown RBP9.47□□□□□ -0.89
SRP54-208ENST00000555557 CYP27C1Q4G0S4 372 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 ATAD3BQ5T9A4 648 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 ZCCHC12Q6PEW1 402 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 FIGNL1Q6PIW4 674 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 NPSR1Q6W5P4 371 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 RNF111Q6ZNA4 994 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 VTCN1Q7Z7D3 282 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 ADGRG5Q8IZF4 528 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 COX18Q8N8Q8 333 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 SMYD1Q8NB12 490 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 NFAM1Q8NET5 270 aaPredicted RBP9.47□□□□□ -0.89
SRP54-208ENST00000555557 OR7G1Q8NGA0 311 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 OR1N1Q8NGS0 311 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 TAMM41Q96BW9 452 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 ZG16BQ96DA0 208 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 TREX2Q9BQ50 279 aaPredicted RBP9.47□□□□□ -0.89
SRP54-208ENST00000555557 RSPO3Q9BXY4 272 aaPredicted RBP9.47□□□□□ -0.89
SRP54-208ENST00000555557 NRSN2Q9GZP1 204 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 LIN28AQ9H9Z2 209 aaKnown RBP9.47□□□□□ -0.89
SRP54-208ENST00000555557 EXD2Q9NVH0 621 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 WDR70Q9NW82 654 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 THUMPD1Q9NXG2 353 aaKnown RBP9.47□□□□□ -0.89
SRP54-208ENST00000555557 GIN1Q9NXP7 522 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 TCFL5Q9UL49 500 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 MKLN1Q9UL63 735 aa9.47□□□□□ -0.89
SRP54-208ENST00000555557 FARSAQ9Y285 508 aaKnown RBP9.47□□□□□ -0.89
SRP54-208ENST00000555557 MRPS18BQ9Y676 258 aaKnown RBP9.47□□□□□ -0.89
SRP54-208ENST00000555557 LOC101059948A0A1B0GTJ6 334 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 CDC14CA4D256 554 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 SAGE2PA6NJ88 616 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 CDRT15L2A8MXV6 281 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 TMEM229AB2RXF0 380 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 MASP2O00187 686 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 TPST1O60507 370 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 NKX2-2O95096 273 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 CT45A8P0DMV1 189 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 CT45A9P0DMV2 189 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 DLSTP36957 453 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 ID4P47928 161 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 CRISP3P54108 245 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 CHRNEQ04844 493 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 RIPK1Q13546 671 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 TGIF1Q15583 401 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 ZNHIT3Q15649 155 aaPredicted RBP9.46□□□□□ -0.89
SRP54-208ENST00000555557 CT45A2Q5DJT8 189 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 HEPHL1Q6MZM0 1159 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 C9orf40Q8IXQ3 194 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 ZSCAN1Q8NBB4 408 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 APCDD1LQ8NCL9 501 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 MORN4Q8NDC4 146 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 C7orf57Q8NEG2 295 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 RMND5BQ96G75 393 aaPredicted RBP9.46□□□□□ -0.89
SRP54-208ENST00000555557 TPD52L3Q96J77 140 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 GAL3ST4Q96RP7 486 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 LMF1Q96S06 567 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 STACQ99469 402 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 LPAR4Q99677 370 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 LMF2Q9BU23 707 aaKnown RBP9.46□□□□□ -0.89
SRP54-208ENST00000555557 ASCL3Q9NQ33 180 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 BATF3Q9NR55 127 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 DUSP22Q9NRW4 184 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 ZNF223Q9UK11 482 aaPredicted RBP9.46□□□□□ -0.89
SRP54-208ENST00000555557 HS3ST3B1Q9Y662 390 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 SPTBN2O15020 2390 aa9.46□□□□□ -0.89
SRP54-208ENST00000555557 FKBP6O75344 327 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 RAB40ALP0C0E4 278 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 TNFRSF1BP20333 461 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 PSMA4P25789 261 aaKnown RBP9.46□□□□□ -0.9
SRP54-208ENST00000555557 OTX2P32243 289 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 STAT5AP42229 794 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 MAGEA8P43361 318 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 RPS15P62841 145 aaKnown RBP9.46□□□□□ -0.9
SRP54-208ENST00000555557 DNASE1L3Q13609 305 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 PCOLCEQ15113 449 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 ARHGAP11BQ3KRB8 267 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 CYBRD1Q53TN4 286 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 CRB2Q5IJ48 1285 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 DCST2Q5T1A1 773 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 INTS11Q5TA45 600 aaKnown RBP9.46□□□□□ -0.9
SRP54-208ENST00000555557 KIRREL2Q6UWL6 708 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 CBLL1Q75N03 491 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 CCDC80Q76M96 950 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 ZAR1Q86SH2 424 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 B3GNT7Q8NFL0 401 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 OR52E4Q8NGH9 312 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 THAP3Q8WTV1 239 aaPredicted RBP9.46□□□□□ -0.9
SRP54-208ENST00000555557 HOXB13Q92826 284 aaPredicted RBP9.46□□□□□ -0.9
SRP54-208ENST00000555557 NKD1Q969G9 470 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 RNF145Q96MT1 663 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 COL21A1Q96P44 957 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 TRNT1Q96Q11 434 aaKnown RBP9.46□□□□□ -0.9
SRP54-208ENST00000555557 SDF2Q99470 211 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 SLC38A1Q9H2H9 487 aa9.46□□□□□ -0.9
SRP54-208ENST00000555557 DCLRE1BQ9H816 532 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms