RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SMYD2Q9NRG4 433 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 BCAP29Q9UHQ4 241 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 DKKL1Q9UK85 242 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 CFL2Q9Y281 166 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 MRPS18CQ9Y3D5 142 aaKnown RBP11.47□□□□□ -0.57
SCAF11-208ENST00000546534 TSC22D4Q9Y3Q8 395 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 PCDHGA11Q9Y5H2 935 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 A8MV72 311 aaPredicted RBP11.46□□□□□ -0.57
SCAF11-208ENST00000546534 EFCAB8A8MWE9 144 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 OVOL3O00110 214 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 TNFRSF21O75509 655 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 PEPDP12955 493 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 PORP16435 677 aaPredicted RBP11.46□□□□□ -0.57
SCAF11-208ENST00000546534 DPP4P27487 766 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 IDUAP35475 653 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 ACVR1BP36896 505 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 CUL3Q13618 768 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 ETFDHQ16134 617 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 PRICKLE4Q2TBC4 344 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 KRTAP24-1Q3LI83 254 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 MILR1Q7Z6M3 343 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 NUDT13Q86X67 352 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 TEX9Q8N6V9 391 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 ADCY4Q8NFM4 1077 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 FNDC9Q8TBE3 224 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 UBTD2Q8WUN7 234 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 AKAP1Q92667 903 aaKnown RBP eCLIP11.46□□□□□ -0.57
SCAF11-208ENST00000546534 REPS1Q96D71 796 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 TMCO6Q96DC7 493 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 TSPAN17Q96FV3 270 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 TRMT61AQ96FX7 289 aaKnown RBP11.46□□□□□ -0.57
SCAF11-208ENST00000546534 UBXN10Q96LJ8 280 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 PINK1Q9BXM7 581 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 BRINP2Q9C0B6 783 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 ALG9Q9H6U8 611 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 MAT2BQ9NZL9 334 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 PROCRQ9UNN8 238 aa11.46□□□□□ -0.57
SCAF11-208ENST00000546534 CR1P17927 2039 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 C17orf51A8MQB3 221 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 SUPT3HB4E1H0 165 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 SUPT3HO75486 399 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 REM1O75628 298 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 CBX7O95931 251 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 FAM157CP0CG43 387 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 PPP3CBP16298 524 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 DRD5P21918 477 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 GRK2P25098 689 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 PPICP45877 212 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 NEK2P51955 445 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 SUCLG1P53597 346 aaKnown RBP11.45□□□□□ -0.58
SCAF11-208ENST00000546534 PHEXP78562 749 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 OCRLQ01968 901 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 MAP4K2Q12851 820 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 FGFBP1Q14512 234 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 FASTKD3Q14CZ7 662 aaKnown RBP11.45□□□□□ -0.58
SCAF11-208ENST00000546534 MORF4L2Q15014 288 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 GUSBP1Q15486 140 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 STAC2Q6ZMT1 411 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 FAM214BQ7L5A3 538 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 WFDC8Q8IUA0 241 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 FBXO36Q8NEA4 188 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 STAG3L4Q8TBR4 150 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 TMBIM1Q969X1 311 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 DTNBP1Q96EV8 351 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 COL21A1Q96P44 957 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 DDX47Q9H0S4 455 aaKnown RBP11.45□□□□□ -0.58
SCAF11-208ENST00000546534 SLCO5A1Q9H2Y9 848 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 NSMCE4AQ9NXX6 385 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 NUDT4Q9NZJ9 180 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 ZNF639Q9UID6 485 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 PLLPQ9Y342 182 aa11.45□□□□□ -0.58
SCAF11-208ENST00000546534 OR6C70A6NIJ9 312 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 H0YIV9 168 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 UBXN8O00124 270 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 TO15178 435 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 SOD3P08294 240 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 STMN1P16949 149 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 CDC25BP30305 580 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 CDKN1AP38936 164 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 FEN1P39748 380 aaKnown RBP11.44□□□□□ -0.58
SCAF11-208ENST00000546534 ARL4CP56559 192 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 DLG1Q12959 904 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 PON3Q15166 354 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 CPSF6Q16630 551 aaKnown RBP eCLIP11.44□□□□□ -0.58
SCAF11-208ENST00000546534 TRMT12Q53H54 448 aaKnown RBP11.44□□□□□ -0.58
SCAF11-208ENST00000546534 LIPJQ5W064 366 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 ISCA2Q86U28 154 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 OR52R1Q8NGF1 315 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 LILRB1Q8NHL6 650 aaPredicted RBP11.44□□□□□ -0.58
SCAF11-208ENST00000546534 RAB3IL1Q8TBN0 382 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 ATOH8Q96SQ7 321 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 ADOQ96SZ5 270 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 PLSCR4Q9NRQ2 329 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 CES1P1Q9UKY3 287 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 ZNF337Q9Y3M9 751 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 ZNF175Q9Y473 711 aa11.44□□□□□ -0.58
SCAF11-208ENST00000546534 GOLGA6L10A0A0M3HER8 536 aa11.43□□□□□ -0.58
SCAF11-208ENST00000546534 CXorf49A8MYA2 514 aaPredicted RBP11.43□□□□□ -0.58
SCAF11-208ENST00000546534 FOXE1O00358 373 aaPredicted RBP11.43□□□□□ -0.58
SCAF11-208ENST00000546534 SEC14L5O43304 696 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms