RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 FLVCR2Q9UPI3 526 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 VPS13AQ96RL7 3174 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 LINC01553A4QN01 128 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 ZNF670-ZNF695F2Z2N8 137 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 POLR1CO15160 346 aaPredicted RBP13.82□□□□□ -0.2
HOXC11-202ENST00000546378 PCDH8O95206 1070 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 FURINP09958 794 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 MAT2AP31153 395 aaKnown RBP13.82□□□□□ -0.2
HOXC11-202ENST00000546378 GIPRP48546 466 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 UBE2MP61081 183 aaKnown RBP13.82□□□□□ -0.2
HOXC11-202ENST00000546378 TOR1AIP1Q5JTV8 583 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 PLEKHM3Q6ZWE6 761 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 MRPL43Q8N983 215 aaKnown RBP13.82□□□□□ -0.2
HOXC11-202ENST00000546378 L3MBTL4Q8NA19 623 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 FBLIM1Q8WUP2 373 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 GABARAPL1Q9H0R8 117 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 MTIF3Q9H2K0 278 aaKnown RBP13.82□□□□□ -0.2
HOXC11-202ENST00000546378 KLK4Q9Y5K2 254 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 CHD9Q3L8U1 2897 aa13.82□□□□□ -0.2
HOXC11-202ENST00000546378 IQCMA0A1B0GVH7 501 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 PCCBP05166 539 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 NPPBP16860 134 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 PBX2P40425 430 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 PGBD2Q6P3X8 592 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 CPOQ8IVL8 374 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 SIMC1Q8NDZ2 872 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 ZCCHC10Q8TBK6 192 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 SPPL3Q8TCT6 385 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 IL21Q9HBE4 155 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 PLEKHB1Q9UF11 243 aaPredicted RBP13.81□□□□□ -0.2
HOXC11-202ENST00000546378 HCN2Q9UL51 889 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 GTF2A1LQ9UNN4 478 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 PRR23D1E9PI22 279 aaPredicted RBP13.81□□□□□ -0.2
HOXC11-202ENST00000546378 RAB36O95755 333 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 UCHL1P09936 223 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 PRR23D2P0DMB1 279 aaPredicted RBP13.81□□□□□ -0.2
HOXC11-202ENST00000546378 CLUP10909 449 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 CXCL3P19876 107 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 ENDOUP21128 410 aaKnown RBP13.81□□□□□ -0.2
HOXC11-202ENST00000546378 MESP2Q0VG99 397 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 KANSL1Q7Z3B3 1105 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 OR8J1Q8NGP2 316 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 SNX18Q96RF0 628 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 CCDC32Q9BV29 185 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 MRPL39Q9NYK5 338 aaKnown RBP13.81□□□□□ -0.2
HOXC11-202ENST00000546378 OR6C2Q9NZP2 312 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 KCNK6Q9Y257 313 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 MEIS3P1A6NDR6 274 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 CCDC85CA6NKD9 419 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 ZAR1LA6NP61 321 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 SAGP10523 405 aaPredicted RBP13.81□□□□□ -0.2
HOXC11-202ENST00000546378 TYRP14679 529 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 ELK1P19419 428 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 PPP2R1BP30154 601 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 NAA10P41227 235 aaPredicted RBP13.81□□□□□ -0.2
HOXC11-202ENST00000546378 MVDP53602 400 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 MTAPQ13126 283 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 NNATQ16517 81 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 SPIN4Q56A73 249 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 LIPJQ5W064 366 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 SFTPA1Q8IWL2 248 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 NRMQ8IXM6 262 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 PLPP6Q8IY26 295 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 ZNF582Q96NG8 517 aaPredicted RBP13.81□□□□□ -0.2
HOXC11-202ENST00000546378 NCKAP1Q9Y2A7 1128 aa13.81□□□□□ -0.2
HOXC11-202ENST00000546378 RP1P56715 2156 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 ORC5O43913 435 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 GPR37L1O60883 481 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 ZNF821O75541 412 aaPredicted RBP13.8□□□□□ -0.2
HOXC11-202ENST00000546378 RGS11O94810 467 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 ENPP1P22413 925 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 SLC6A11P48066 632 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 MAB21L1Q13394 359 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 SHISA5Q8N114 240 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 ANKK1Q8NFD2 765 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 SLC5A11Q8WWX8 675 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 PPP1R16AQ96I34 528 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 NARS2Q96I59 477 aaKnown RBP13.8□□□□□ -0.2
HOXC11-202ENST00000546378 RSPO3Q9BXY4 272 aaPredicted RBP13.8□□□□□ -0.2
HOXC11-202ENST00000546378 DMRT3Q9NQL9 472 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 RASD1Q9Y272 281 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 LEFTY2O00292 366 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 AP1S2P56377 157 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 LTB4RQ15722 352 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 ZNF613Q6PF04 617 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 SLCO4C1Q6ZQN7 724 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 PRICKLE2Q7Z3G6 844 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 NKAIN4Q8IVV8 208 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 GSDMCQ9BYG8 508 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 FTSJ1Q9UET6 329 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 MAPRE3Q9UPY8 281 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 MED12Q93074 2177 aa13.8□□□□□ -0.2
HOXC11-202ENST00000546378 OR52A4PA6NMU1 304 aa13.79□□□□□ -0.2
HOXC11-202ENST00000546378 TSPAN9O75954 239 aa13.79□□□□□ -0.2
HOXC11-202ENST00000546378 POP4O95707 220 aaKnown RBP13.79□□□□□ -0.2
HOXC11-202ENST00000546378 RHOP08100 348 aa13.79□□□□□ -0.2
HOXC11-202ENST00000546378 SNRPBP14678 240 aaKnown RBP13.79□□□□□ -0.2
HOXC11-202ENST00000546378 POLR2EP19388 210 aaKnown RBP13.79□□□□□ -0.2
HOXC11-202ENST00000546378 DDOSTP39656 456 aa13.79□□□□□ -0.2
HOXC11-202ENST00000546378 WNT4P56705 351 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms