RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 KCNIP3Q9Y2W7 256 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 CREBL2O60519 120 aaPredicted RBP11.87□□□□□ -0.51
COL4A6-209ENST00000545689 NDUFB2O95178 105 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 TIMP1P01033 207 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 RAB11BQ15907 218 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 TMEM225Q6GV28 225 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 SPATC1Q76KD6 591 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 VWA5B2Q8N398 1253 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 ASB11Q8WXH4 323 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 SORCS1Q8WY21 1168 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 MTG2Q9H4K7 406 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 LAMB1P07942 1786 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 CACNA1SQ13698 1873 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 NPIPA2E9PIF3 369 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 NPIPA3F8WFD2 350 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 CHRFAM7AQ494W8 412 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 ALKBH2Q6NS38 261 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 SHFQ7M4L6 423 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 OR6C4Q8NGE1 309 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 ZNF471Q9BX82 626 aaPredicted RBP11.87□□□□□ -0.51
COL4A6-209ENST00000545689 LHX3Q9UBR4 397 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 APOBEC3BQ9UH17 382 aaKnown RBP11.87□□□□□ -0.51
COL4A6-209ENST00000545689 A0A1B0GUL6 1792 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 BORCS7-ASMTA0A0B4J1R7 106 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 ADAMTS4O75173 837 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 DNASE1P24855 282 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 CPOXP36551 454 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 CDKN2CP42773 168 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 ARL6IP1Q15041 203 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 SPRED1Q7Z699 444 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 CCDC28AQ8IWP9 274 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 SYT14Q8NB59 555 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 SLC6A5Q9Y345 797 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 VSTM5A8MXK1 200 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 FOXE1O00358 373 aaPredicted RBP11.87□□□□□ -0.51
COL4A6-209ENST00000545689 ZNF217O75362 1048 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 SCGB1D2O95969 90 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 HSD11B2P80365 405 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 ODF4Q2M2E3 257 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 OR52E2Q8NGJ4 325 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 KLHL9Q9P2J3 617 aa11.87□□□□□ -0.51
COL4A6-209ENST00000545689 NRAPQ86VF7 1730 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 C11orf98E9PRG8 122 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 POLR1CO15160 346 aaPredicted RBP11.86□□□□□ -0.51
COL4A6-209ENST00000545689 APOL3O95236 402 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 HBQ1P09105 142 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 JUNDP17535 347 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 BMXP51813 675 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 AFF1P51825 1210 aaKnown RBP11.86□□□□□ -0.51
COL4A6-209ENST00000545689 MRPS10P82664 201 aaKnown RBP11.86□□□□□ -0.51
COL4A6-209ENST00000545689 TBCEQ15813 527 aaPredicted RBP11.86□□□□□ -0.51
COL4A6-209ENST00000545689 SPIN3Q5JUX0 258 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 FAM26DQ5JW98 314 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 PAQR9Q6ZVX9 377 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 KCTD9Q7L273 389 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 OR13C3Q8NGS6 347 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 PROKR1Q8TCW9 393 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 ZC3H10Q96K80 434 aaKnown RBP11.86□□□□□ -0.51
COL4A6-209ENST00000545689 C3orf30Q96M34 536 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 ZNF350Q9GZX5 532 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 ANKMY1Q9P2S6 941 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 SLC7A11Q9UPY5 501 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 MEGF11A6BM72 1044 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 SYNGR4O95473 234 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 ADORA3P0DMS8 318 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 HNRNPA1L2Q32P51 320 aaKnown RBP11.86□□□□□ -0.51
COL4A6-209ENST00000545689 PLBD1Q6P4A8 553 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 TMEM205Q6UW68 189 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.86□□□□□ -0.51
COL4A6-209ENST00000545689 FAM83HQ6ZRV2 1179 aaPredicted RBP11.86□□□□□ -0.51
COL4A6-209ENST00000545689 HSD11B1LQ7Z5J1 315 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 OR5M3Q8NGP4 307 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 FOXJ1Q92949 421 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 C7orf50Q9BRJ6 194 aaKnown RBP11.86□□□□□ -0.51
COL4A6-209ENST00000545689 TIMM29Q9BSF4 260 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 STRADBQ9C0K7 418 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 CWH43Q9H720 699 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 SUSD2Q9UGT4 822 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 COL22A1Q8NFW1 1626 aaPredicted RBP11.86□□□□□ -0.51
COL4A6-209ENST00000545689 SYNPOQ8N3V7 929 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 NEIL2Q969S2 332 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 CIDECQ96AQ7 238 aaPredicted RBP11.86□□□□□ -0.51
COL4A6-209ENST00000545689 DDIT4LQ96D03 193 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 ERVK13-1Q9NX77 482 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 GDE1Q9NZC3 331 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 CLEC4EQ9ULY5 219 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 OR2B3O76000 313 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 CD97P48960 835 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 GRIN2CQ14957 1233 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 UGT8Q16880 541 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 PLXDC1Q8IUK5 500 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 OR5AR1Q8NGP9 310 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 NDNFQ8TB73 568 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 MZB1Q8WU39 189 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 TCEAL4Q96EI5 215 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 MYADMQ96S97 322 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 CLDN24A6NM45 220 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 RAD51DO75771 328 aa11.86□□□□□ -0.51
COL4A6-209ENST00000545689 HNRNPA2B1P22626 353 aaKnown RBP11.86□□□□□ -0.51
COL4A6-209ENST00000545689 CBLP22681 906 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms