RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 H3BQF6 201 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 PPP6CO00743 305 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 DSCR3O14972 297 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 BIRC5O15392 142 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TLX3O43711 291 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 CRCPO75575 148 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 BPGMP07738 259 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SERPINA6P08185 405 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 CD22P20273 847 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 IDUAP35475 653 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ETV4P43268 484 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 AVPR1BP47901 424 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 DIO1P49895 249 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 PKNOX1P55347 436 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 UCP3P55916 312 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SKP1P63208 163 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 RUNX1T1Q06455 604 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TGM3Q08188 693 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 NPRL3Q12980 569 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TRAF3Q13114 568 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 GPS2Q13227 327 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 DDX39BQ13838 428 aaKnown RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 E2F2Q14209 437 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 HERC3Q15034 1050 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TTMPQ5BVD1 217 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 PRMT9Q6P2P2 845 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 GPRIN3Q6ZVF9 776 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TIPARPQ7Z3E1 657 aaKnown RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 LAS2Q8IYD9 372 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 METTL27Q8N6F8 245 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 CDYL2Q8N8U2 506 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SLC38A9Q8NBW4 561 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 OR7G3Q8NG95 312 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 OR4F6Q8NGB9 312 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ZCCHC10Q8TBK6 192 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 MOCOSQ96EN8 888 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 MMABQ96EY8 250 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 FAR2Q96K12 515 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF382Q96SR6 550 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SH3GL2Q99962 352 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 C17orf62Q9BQA9 187 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 EFHD1Q9BUP0 239 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 GATA5Q9BWX5 397 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SPRY4Q9C004 299 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 RHBGQ9H310 441 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 NCOR1P1Q9H4R4 102 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 GSTO2Q9H4Y5 243 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ELOVL6Q9H5J4 265 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SYNPO2LQ9H987 977 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SCPEP1Q9HB40 452 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 EML4Q9HC35 981 aaKnown RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ANKHQ9HCJ1 492 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ZBTB26Q9HCK0 441 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 MLXIPLQ9NP71 852 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 CDC14AQ9UNH5 594 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SNX6Q9UNH7 406 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 RPH3AQ9Y2J0 694 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 COA3Q9Y2R0 106 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TMED5Q9Y3A6 229 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 MAU2Q9Y6X3 613 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 KIF26BQ2KJY2 2108 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 PCM1Q15154 2024 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 MYO18BQ8IUG5 2567 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 A0A0A6YYC8 382 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 A0A0G2JPF8 293 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 RNF103-CHMP3A0A140T963 221 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SRRM3A6NNA2 597 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 HNRNPCL3B7ZW38 293 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 I3L1I5 382 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 FFAR3O14843 346 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 GPR42O15529 346 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 DHHO43323 396 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 DNAJB5O75953 348 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 OR4F21O95013 312 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 UNC5CO95185 931 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ESRRBO95718 433 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 PTBP3O95758 552 aaKnown RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 KRT6AP02538 564 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 KRT6BP04259 564 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ENO1P06733 434 aaKnown RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 CD63P08962 238 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF888P0CJ79 500 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 HNRNPCL4P0DMR1 293 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 JUNBP17275 347 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TCN2P20062 427 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 FPR1P21462 350 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 ZNF10P21506 573 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 HMOX2P30519 316 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 RORAP35398 523 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 DLSTP36957 453 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 EIF2S3P41091 472 aaKnown RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 OR1D4P47884 311 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 KRT6CP48668 564 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 SLC18A1P54219 525 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 RPS15P62841 145 aaKnown RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 FAM53BQ14153 422 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 HABP2Q14520 560 aaPredicted RBP4.79□□□□□ -1.64
CLIP1-217ENST00000543205 TGIF1Q15583 401 aa4.79□□□□□ -1.64
CLIP1-217ENST00000543205 NTRK2Q16620 822 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms