RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 HS6ST1O60243 411 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 NKX2-2O95096 273 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 HMGN2P05204 90 aaKnown RBP16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 FBXO45P0C2W1 286 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 FAM87AP0C7U9 286 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 PNLIPRP2P54317 469 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 OC90Q02509 493 aaPredicted RBP16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 FADDQ13158 208 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 GNA13Q14344 377 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 INAQ16352 499 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 LRIF1Q5T3J3 769 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 ATAD3BQ5T9A4 648 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 RTL4Q6ZR62 310 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 NUP54Q7Z3B4 507 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 ANKRD46Q86W74 232 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 BEST3Q8N1M1 668 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 FAM98AQ8NCA5 519 aaKnown RBP16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 BCAS4Q8TDM0 211 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 THAP3Q8WTV1 239 aaPredicted RBP16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 OIT3Q8WWZ8 545 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 PMM1Q92871 262 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 VPS33AQ96AX1 596 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 TMCO6Q96DC7 493 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 SPACA9Q96E40 222 aaPredicted RBP16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 C5orf34Q96MH7 638 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 SLC35A5Q9BS91 424 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 ITPAQ9BY32 194 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 PIGUQ9H490 435 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 CNIH4Q9P003 139 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 LRFN1Q9P244 771 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 DOCK10Q96BY6 2186 aa16.19■□□□□ 0.18
CLSTN3-210ENST00000540931 PCSK5Q92824 1860 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 EVPLLA8MZ36 301 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 WDPCPO95876 746 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 GUSBP08236 651 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 CT45A8P0DMV1 189 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 CT45A9P0DMV2 189 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 MATN1P21941 496 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 IL12BP29460 328 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 SOX18P35713 384 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 KHKP50053 298 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 PSG6Q00889 435 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 PLCXD2Q0VAA5 305 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 KLRB1Q12918 225 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 RAPSNQ13702 412 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 TUBA3CQ13748 450 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 CT45A2Q5DJT8 189 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 SAXO2Q658L1 398 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 TUBA3EQ6PEY2 450 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 SLC44A2Q8IWA5 706 aaPredicted RBP16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 CYP4Z2PQ8N1L4 340 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 TEX19Q8NA77 164 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 GPR151Q8TDV0 419 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 PNPLA2Q96AD5 504 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 GIMAP5Q96F15 307 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 SLC35G5Q96KT7 338 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 SERHLQ9NQF3 203 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 CBLCQ9ULV8 474 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 LIPT1Q9Y234 373 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 B3GNT3Q9Y2A9 372 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 TP53TG5Q9Y2B4 290 aa16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 KLF13Q9Y2Y9 288 aaPredicted RBP16.18■□□□□ 0.18
CLSTN3-210ENST00000540931 PIEZO2Q9H5I5 2752 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 OR6C70A6NIJ9 312 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 B8ZZF3 427 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 KLRC4-KLRK1H3BQV0 150 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 MASP2O00187 686 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 PRKNO60260 465 aaPredicted RBP16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 PPM1BO75688 479 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 CAPN3P20807 821 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 ENDOUP21128 410 aaKnown RBP16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 ABCD3P28288 659 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 MAP3K8P41279 467 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 CLK3P49761 638 aaKnown RBP16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 TNFSF10P50591 281 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 SNTA1Q13424 505 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 LY6DQ14210 128 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 LASP1Q14847 261 aaKnown RBP16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 NTRK2Q16620 822 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 FAM91A1Q658Y4 838 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 RPUSD3Q6P087 351 aaKnown RBP16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 TMEM81Q6P7N7 255 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 ANGPTL8Q6UXH0 198 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 Q6ZS92 163 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 COX18Q8N8Q8 333 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 SLC9A6Q92581 669 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 JADE3Q92613 823 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 ROPN1LQ96C74 230 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 SLC35A4Q96G79 324 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 CCDC106Q9BWC9 280 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 BTBD2Q9BX70 525 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 HOXD1Q9GZZ0 328 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 NXF5Q9H1B4 397 aaKnown RBP16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 MYLK2Q9H1R3 596 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 EFCAB1Q9HAE3 211 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 TPT1P8Q9HAU6 139 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 SLC52A3Q9NQ40 469 aa16.17■□□□□ 0.18
CLSTN3-210ENST00000540931 EQTNQ9NQ60 294 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms