RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 OR52N1Q8NH53 320 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 OR52P1PQ8NH57 321 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 RPLP0P6Q8NHW5 317 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 SH3RF2Q8TEC5 729 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 CYB5D2Q8WUJ1 264 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 C15orf40Q8WUR7 153 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 NDRG1Q92597 394 aaKnown RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 RFKQ969G6 155 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 C1GALT1C1Q96EU7 318 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 TPD52L3Q96J77 140 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 SPATA33Q96N06 139 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 LINC00052Q96N35 136 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 OR2A7Q96R45 310 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 GFM1Q96RP9 751 aaKnown RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 C12orf57Q99622 126 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 NIPSNAP1Q9BPW8 284 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 SEC22CQ9BRL7 303 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 UTP23Q9BRU9 249 aaKnown RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 PDCD10Q9BUL8 212 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 TSSK6Q9BXA6 273 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 TTYH1Q9H313 450 aaPredicted RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 B3GAT2Q9NPZ5 323 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 NANSQ9NR45 359 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 SEMA3GQ9NS98 782 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 KCTD5Q9NXV2 234 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 ACTR10Q9NZ32 417 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 WWOXQ9NZC7 414 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 MED11Q9P086 117 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 KCMF1Q9P0J7 381 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 COMMD3Q9UBI1 195 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 FZD4Q9ULV1 537 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 SCML1Q9UN30 329 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 AKT3Q9Y243 479 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 SLC6A5Q9Y345 797 aa6.32□□□□□ -1.4
USP28-207ENST00000538475 SPIN1Q9Y657 262 aaPredicted RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 MTCL1Q9Y4B5 1905 aaKnown RBP6.32□□□□□ -1.4
USP28-207ENST00000538475 TRIP12Q14669 1992 aaPredicted RBP6.31□□□□□ -1.4
USP28-207ENST00000538475 A0A1W2PRB8 838 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 GSAPA4D1B5 854 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 OR51F1A6NGY5 319 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 NCF1BA6NI72 391 aaPredicted RBP6.31□□□□□ -1.4
USP28-207ENST00000538475 PCP4L1A6NKN8 68 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 DRGXA6NNA5 263 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 NCF1CA8MVU1 366 aaPredicted RBP6.31□□□□□ -1.4
USP28-207ENST00000538475 MCIDASD6RGH6 385 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 L7N2F9 121 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 WRBO00258 174 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 PDCD5O14737 125 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 SLC16A5O15375 505 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 TAPBPO15533 448 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 ADAM12O43184 909 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 PRODHO43272 600 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 ZNF749O43361 778 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 HPGDSO60760 199 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 REM1O75628 298 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 RP2O75695 350 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 RECQL4O94761 1208 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 UBL3O95164 117 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 HTR3BO95264 441 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 IFNW1P05000 195 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 SERPIND1P05546 499 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 ANXA5P08758 320 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 HIST1H2AGP0C0S8 130 aaPredicted RBP6.31□□□□□ -1.4
USP28-207ENST00000538475 COL6A1P12109 1028 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 SRCP12931 536 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 TYRP1P17643 537 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 AMD1P17707 334 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 HIST1H2ADP20671 130 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 NFYAP23511 347 aaPredicted RBP6.31□□□□□ -1.4
USP28-207ENST00000538475 S100PP25815 95 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 HOXA11P31270 313 aaPredicted RBP6.31□□□□□ -1.4
USP28-207ENST00000538475 S100A11P31949 105 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 CDKN2CP42773 168 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 HAAOP46952 286 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 MECP2P51608 486 aaKnown RBP6.31□□□□□ -1.4
USP28-207ENST00000538475 XKP51811 444 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 NR0B1P51843 470 aaKnown RBP6.31□□□□□ -1.4
USP28-207ENST00000538475 AGFG1P52594 562 aaKnown RBP6.31□□□□□ -1.4
USP28-207ENST00000538475 PRMT2P55345 433 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 AP3S2P59780 193 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 ERVFC1P60507 584 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 GMFBP60983 142 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 MRPS10P82664 201 aaKnown RBP6.31□□□□□ -1.4
USP28-207ENST00000538475 EFNB1P98172 346 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 SLC10A7Q0GE19 358 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 STX4Q12846 297 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 ZNF235Q14590 738 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 UBXN2BQ14CS0 331 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 MPPED2Q15777 294 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 ETFDHQ16134 617 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 MINDY4Q4G0A6 757 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.31□□□□□ -1.4
USP28-207ENST00000538475 DGKKQ5KSL6 1271 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 CTSL3PQ5NE16 218 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 GCNT6Q5T4J0 391 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 BCL2L15Q5TBC7 163 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 HIST2H2AA3Q6FI13 130 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 RAET1GQ6H3X3 334 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 NOXRED1Q6NXP6 359 aa6.31□□□□□ -1.4
USP28-207ENST00000538475 NCEH1Q6PIU2 408 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms