RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TSPAN8P19075 237 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 PRDX6P30041 224 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 AKT2P31751 481 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 PRDX2P32119 198 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 KIF5BP33176 963 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 MAGEA9P43362 315 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 GSK3BP49841 420 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 TKTL1P51854 596 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 VCPP55072 806 aaKnown RBP2.13□□□□□ -2.07
CD44-238ENST00000534296 LYZP61626 148 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 NUCB2P80303 420 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 GABPB1Q06547 395 aaPredicted RBP2.13□□□□□ -2.07
CD44-238ENST00000534296 PPP1R3AQ16821 1122 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 Q1RN00 199 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 SLC22A6Q4U2R8 563 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 RHBDD2Q6NTF9 364 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 FAM159AQ6UWV7 190 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 ARSKQ6UWY0 536 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 HIPK1Q86Z02 1210 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 RNF148Q8N7C7 305 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 CNNM3Q8NE01 707 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 FAM71CQ8NEG0 241 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 OR52E1Q8NGJ3 308 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 ZNF671Q8TAW3 534 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 VN1R17PQ8TDU5 208 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 ITLN1Q8WWA0 313 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 NCLNQ969V3 563 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 SDSLQ96GA7 329 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 SAMD8Q96LT4 415 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 ACCSQ96QU6 501 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 JPH2Q9BR39 696 aaPredicted RBP2.13□□□□□ -2.07
CD44-238ENST00000534296 FICDQ9BVA6 458 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 TSPY26PQ9H489 355 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 POLE3Q9NRF9 147 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 CENPMQ9NSP4 180 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 DCAF13Q9NV06 445 aaKnown RBP2.13□□□□□ -2.07
CD44-238ENST00000534296 C1orf123Q9NWV4 160 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 HPF1Q9NWY4 346 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 DUS2Q9NX74 493 aaKnown RBP2.13□□□□□ -2.07
CD44-238ENST00000534296 ACTR3BQ9P1U1 418 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 CELA1Q9UNI1 258 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 AURKCQ9UQB9 309 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 SALL1Q9NSC2 1324 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 OBSCNQ5VST9 7968 aa2.13□□□□□ -2.07
CD44-238ENST00000534296 TRBV7-9A0A0J9YWB2 115 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 CASKO14936 926 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 KBTBD11O94819 623 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 AKR7A3O95154 331 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 TRIM16O95361 564 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 IGSF6O95976 241 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 PIGRP01833 764 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 IGFBP1P08833 259 aaPredicted RBP2.12□□□□□ -2.07
CD44-238ENST00000534296 DUX4L4P0CJ87 422 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 CALCBP10092 127 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 UQCRBP14927 111 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 PVRP15151 417 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 DESP17661 470 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 PAICSP22234 425 aaKnown RBP2.12□□□□□ -2.07
CD44-238ENST00000534296 AXLP30530 894 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 PRKAR2BP31323 418 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 RFC2P35250 354 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 SAA4P35542 130 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 HMGCLP35914 325 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 RPL4P36578 427 aaKnown RBP2.12□□□□□ -2.07
CD44-238ENST00000534296 GNPDA1P46926 289 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 SGSHP51688 502 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 IST1P53990 364 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 IL1RL1Q01638 556 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 NAAAQ02083 359 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 HSF2Q03933 536 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 SCGB2A2Q13296 93 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 ITPK1Q13572 414 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 SERTAD2Q14140 314 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 PDIA5Q14554 519 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 RAB35Q15286 201 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 RNF212Q495C1 297 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 NHLRC3Q5JS37 347 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 PRR5LQ6MZQ0 368 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 AFTPHQ6ULP2 937 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 LPCAT2Q7L5N7 544 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 PRR22Q8IZ63 422 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 ELMOD2Q8IZ81 293 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 CERS5Q8N5B7 392 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 TBC1D31Q96DN5 1066 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 MRPL38Q96DV4 380 aaKnown RBP2.12□□□□□ -2.07
CD44-238ENST00000534296 RAB3CQ96E17 227 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 VPS39Q96JC1 886 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 CAPNS2Q96L46 248 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 B3GALT6Q96L58 329 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 C16orf45Q96MC5 204 aaPredicted RBP2.12□□□□□ -2.07
CD44-238ENST00000534296 MCCC1Q96RQ3 725 aaPredicted RBP2.12□□□□□ -2.07
CD44-238ENST00000534296 ALG9Q9H6U8 611 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 KAT8Q9H7Z6 458 aaKnown RBP2.12□□□□□ -2.07
CD44-238ENST00000534296 ADGRL4Q9HBW9 690 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 YAE1D1Q9NRH1 226 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 FARSBQ9NSD9 589 aaKnown RBP2.12□□□□□ -2.07
CD44-238ENST00000534296 SDAD1Q9NVU7 687 aaKnown RBP eCLIP2.12□□□□□ -2.07
CD44-238ENST00000534296 IMPAD1Q9NX62 359 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 NINJ2Q9NZG7 142 aa2.12□□□□□ -2.07
CD44-238ENST00000534296 CNOT2Q9NZN8 540 aaKnown RBP2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms