RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 XPO6Q96QU8 1125 aaKnown RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 ZNF577Q9BSK1 485 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 ZNF350Q9GZX5 532 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 MRPL40Q9NQ50 206 aaKnown RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 AGPAT4Q9NRZ5 378 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 DNAJC17Q9NVM6 304 aaKnown RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 INTS10Q9NVR2 710 aaKnown RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 THAP10Q9P2Z0 257 aaPredicted RBP3.36□□□□□ -1.87
CD44-235ENST00000532339 TMED3Q9Y3Q3 217 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 RNF215Q9Y6U7 377 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 TRRAPQ9Y4A5 3859 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 RP1P56715 2156 aa3.36□□□□□ -1.87
CD44-235ENST00000532339 PLXNA2O75051 1894 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 DENND4CQ5VZ89 1909 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 SCN8AQ9UQD0 1980 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 SMIM28A0A1B0GU29 152 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 A0A1W2PRB8 838 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 LRRD1A4D1F6 860 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 TMEM150BA6NC51 233 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 PLOD2O00469 737 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 INPP4BO15327 924 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 CACNG3O60359 315 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 NOL4O94818 638 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 STBD1O95210 358 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 TSHBP01222 138 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 CD48P09326 243 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 ZNF26P17031 533 aaPredicted RBP3.35□□□□□ -1.87
CD44-235ENST00000532339 JAK1P23458 1154 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 SFNP31947 248 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 HSD17B3P37058 310 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 SPAM1P38567 509 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 KRTAP10-3P60369 221 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 RPS18P62269 152 aaKnown RBP3.35□□□□□ -1.87
CD44-235ENST00000532339 CSNK1G2P78368 415 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 SLC7A9P82251 487 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 ZFP36L1Q07352 338 aaKnown RBP3.35□□□□□ -1.87
CD44-235ENST00000532339 AP1B1Q10567 949 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 TFDP1Q14186 410 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 MXD4Q14582 209 aaPredicted RBP3.35□□□□□ -1.87
CD44-235ENST00000532339 UBE2SQ16763 222 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 UGP2Q16851 508 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 ZFP69Q49AA0 526 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 C11orf63Q6NUN7 778 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 IL17RELQ6ZVW7 336 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 NRARPQ7Z6K4 114 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 GTSCR1Q86UQ5 136 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 NUDT13Q86X67 352 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 PLA2G4DQ86XP0 818 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 TMEM25Q86YD3 366 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 MMD2Q8IY49 270 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 APCDD1Q8J025 514 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 LYG1Q8N1E2 194 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 RASGEF1AQ8N9B8 481 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 OR11H4Q8NGC9 324 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 OR2T34Q8NGX1 318 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 SPPL2BQ8TCT7 592 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 TCP11Q8WWU5 503 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 PROX1Q92786 737 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 TMEM143Q96AN5 459 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 BSCL2Q96G97 398 aaPredicted RBP3.35□□□□□ -1.87
CD44-235ENST00000532339 FAM71F1Q96KD3 344 aaPredicted RBP3.35□□□□□ -1.87
CD44-235ENST00000532339 ART5Q96L15 291 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 OPRPNQ99935 248 aaPredicted RBP3.35□□□□□ -1.87
CD44-235ENST00000532339 C19orf24Q9BVV8 132 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 NFKBIZQ9BYH8 718 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 RNF41Q9H4P4 317 aaPredicted RBP3.35□□□□□ -1.87
CD44-235ENST00000532339 PELI2Q9HAT8 420 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 APOBEC3GQ9HC16 384 aaKnown RBP3.35□□□□□ -1.87
CD44-235ENST00000532339 OLFML3Q9NRN5 406 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 IARS2Q9NSE4 1012 aaKnown RBP3.35□□□□□ -1.87
CD44-235ENST00000532339 AKAP7Q9P0M2 348 aaPredicted RBP3.35□□□□□ -1.87
CD44-235ENST00000532339 DAPK2Q9UIK4 370 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 NCKAP1Q9Y2A7 1128 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 NEDD4P46934 1319 aa3.35□□□□□ -1.87
CD44-235ENST00000532339 IGLV3-22A0A075B6J6 115 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 TRAV24A0A0B4J272 114 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 LOC101059948A0A1B0GTJ6 334 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 A0A1W2PPW3 197 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 TLCD2A6NGC4 264 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 ARHGEF9O43307 516 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 LATO43561 262 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 PRAF2O60831 178 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 NEBLO76041 1014 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 OLFM2O95897 454 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 SLC16A8O95907 504 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 IGHV4-38-2P0DP08 117 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 UROSP10746 265 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 IRF2P14316 349 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 TYMPP19971 482 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 MSH3P20585 1137 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 IL4RP24394 825 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 SOAT1P35610 550 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 NUDT1P36639 197 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 MNDAP41218 407 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 FRKP42685 505 aaPredicted RBP3.34□□□□□ -1.87
CD44-235ENST00000532339 RPL21P46778 160 aaKnown RBP3.34□□□□□ -1.87
CD44-235ENST00000532339 SNU13P55769 128 aaKnown RBP3.34□□□□□ -1.87
CD44-235ENST00000532339 B3GALT5-AS1P59052 145 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 ST8SIA6P61647 398 aa3.34□□□□□ -1.87
CD44-235ENST00000532339 RPS14P62263 151 aaKnown RBP3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms