RNA–Protein interactions for RNA: ENST00000532285.1

CAPN1-222, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-222	ENST00000532285	DMRTA2	Q96SC8	542 aa		21.05	■□□□□ 0.96
CAPN1-222	ENST00000532285	EXO5	Q9H790	373 aa		21.05	■□□□□ 0.96
CAPN1-222	ENST00000532285	ACKR4	Q9NPB9	350 aa		21.05	■□□□□ 0.96
CAPN1-222	ENST00000532285	DDX18	Q9NVP1	670 aa	Known RBP	21.05	■□□□□ 0.96
CAPN1-222	ENST00000532285	SH3BP4	Q9P0V3	963 aa		21.05	■□□□□ 0.96
CAPN1-222	ENST00000532285	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	21.05	■□□□□ 0.96
CAPN1-222	ENST00000532285	TRGV5	A0A0B4J1U4	118 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	CYSRT1	A8MQ03	144 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	UPK1A	O00322	258 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	UGT2B11	O75310	529 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	DDX5	P17844	614 aa	Known RBP	21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	GDF1	P27539	372 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	COL8A1	P27658	744 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	KRT20	P35900	424 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	ZNF155	Q12901	538 aa	Predicted RBP	21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	GXYLT1	Q4G148	440 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	C6orf136	Q5SQH8	315 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	ANKRD26P1	Q6NSI1	321 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	NPSR1	Q6W5P4	371 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	TMCO6	Q96DC7	493 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	ZBED6CL	Q96FA7	236 aa	Predicted RBP	21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	NODAL	Q96S42	347 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	GIMAP2	Q9UG22	337 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	HRH3	Q9Y5N1	445 aa		21.04	■□□□□ 0.96
CAPN1-222	ENST00000532285	PSMG1	O95456	288 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	HPCAL1	P37235	193 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	RPL3	P39023	403 aa	Known RBP	21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	FRK	P42685	505 aa	Predicted RBP	21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	SLC1A6	P48664	564 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	MANF	P55145	182 aa	Known RBP	21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	EFR3A	Q14156	821 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	ZNF385B	Q569K4	471 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	EMC4	Q5J8M3	183 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	FNDC7	Q5VTL7	733 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	HHAT	Q5VTY9	493 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	DESI1	Q6ICB0	168 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	TMEM211	Q6ICI0	200 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	ZNF551	Q7Z340	670 aa	Predicted RBP	21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	KIRREL3	Q8IZU9	778 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	LIX1	Q8N485	282 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	FNDC5	Q8NAU1	212 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	CIDEC	Q96AQ7	238 aa	Predicted RBP	21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	SARAF	Q96BY9	339 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	TUBGCP3	Q96CW5	907 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	SLC35A4	Q96G79	324 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	GNRHR2	Q96P88	292 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	OSBPL11	Q9BXB4	747 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	ZNF395	Q9H8N7	513 aa	Predicted RBP	21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	ACSS1	Q9NUB1	689 aa	Predicted RBP	21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	ACAD8	Q9UKU7	415 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	RAP2C	Q9Y3L5	183 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	OR10H1	Q9Y4A9	318 aa		21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	KLF2	Q9Y5W3	355 aa	Predicted RBP	21.03	■□□□□ 0.96
CAPN1-222	ENST00000532285	TSPAN2	O60636	221 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	ICOSLG	O75144	302 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	PRPS2	P11908	318 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	BGN	P21810	368 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	ELAVL4	P26378	380 aa	Known RBP	21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	IL12B	P29460	328 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	GPC1	P35052	558 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	PNLIPRP2	P54317	469 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	PSG6	Q00889	435 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	HSPB3	Q12988	150 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	ZNHIT3	Q15649	155 aa	Predicted RBP	21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	TIGD3	Q6B0B8	471 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	LARP4	Q71RC2	724 aa	Known RBP eCLIP	21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	ZNF781	Q8N8C0	355 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	OR1J4	Q8NGS1	313 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	NEIL3	Q8TAT5	605 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	ADO	Q96SZ5	270 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	PAIP2	Q9BPZ3	127 aa	Known RBP	21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	C20orf27	Q9GZN8	174 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	PNPLA3	Q9NST1	481 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	KLRF1	Q9NZS2	232 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	ATP6V1H	Q9UI12	483 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	C15orf41	Q9Y2V0	281 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	CENPE	Q02224	2701 aa		21.02	■□□□□ 0.96
CAPN1-222	ENST00000532285	PRAMEF25	A6NGN4	478 aa		21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	PRSS44	E7EML9	344 aa		21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	RPL14	P50914	215 aa	Known RBP	21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	MRPS22	P82650	360 aa	Known RBP	21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	MAD2L1	Q13257	205 aa	Predicted RBP	21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	STX3	Q13277	289 aa		21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	CYP27C1	Q4G0S4	372 aa		21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	WLS	Q5T9L3	541 aa		21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	IL23R	Q5VWK5	629 aa		21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	NCCRP1	Q6ZVX7	275 aa	Predicted RBP	21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	ANKRD42	Q8N9B4	389 aa		21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	OR5M9	Q8NGP3	310 aa		21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	C1orf50	Q9BV19	199 aa		21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	UBQLN3	Q9H347	655 aa		21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	EIF3L	Q9Y262	564 aa	Known RBP	21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	ARHGAP21	Q5T5U3	1957 aa		21.01	■□□□□ 0.95
CAPN1-222	ENST00000532285	CELSR2	Q9HCU4	2923 aa		21	■□□□□ 0.95
CAPN1-222	ENST00000532285	NBPF19	A0A087WUL8	3843 aa		21	■□□□□ 0.95
CAPN1-222	ENST00000532285	TTC36	A6NLP5	189 aa		21	■□□□□ 0.95
CAPN1-222	ENST00000532285	FIGNL2	A6NMB9	653 aa		21	■□□□□ 0.95
CAPN1-222	ENST00000532285	GNB5	O14775	395 aa		21	■□□□□ 0.95
CAPN1-222	ENST00000532285	SCAMP2	O15127	329 aa	Known RBP	21	■□□□□ 0.95
CAPN1-222	ENST00000532285	TRAPPC6A	O75865	159 aa		21	■□□□□ 0.95

Retrieved 100 of 20,778 RNA–protein pairs in 27 ms