RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 TMEM237Q96Q45 408 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 YIPF4Q9BSR8 244 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 HEY2Q9UBP5 337 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 GPR55Q9Y2T6 319 aaPredicted RBP13.42□□□□□ -0.26
VPS28-215ENST00000531924 C2CD3Q4AC94 2353 aa13.42□□□□□ -0.26
VPS28-215ENST00000531924 NINQ8N4C6 2090 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 DLX3O60479 287 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 ABHD2P08910 425 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 EPXP11678 715 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 CHN1P15882 459 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 PKNOX1P55347 436 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 HMGCS1Q01581 520 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 DUSP2Q05923 314 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 DAZAP2Q15038 168 aaPredicted RBP13.41□□□□□ -0.26
VPS28-215ENST00000531924 CEBPEQ15744 281 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 IMPG1Q17R60 797 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 ZNF628Q5EBL2 1059 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 FAM9CQ8IZT9 166 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 TMEM151AQ8N4L1 468 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 CCNYL1Q8N7R7 359 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 C9orf106Q8NAJ2 232 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 C16orf78Q8WTQ4 265 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 SFXN2Q96NB2 322 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 BTBD9Q96Q07 612 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 TUBA1CQ9BQE3 449 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 ACPTQ9BZG2 426 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 OR2B2Q9GZK3 357 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 ACBD3Q9H3P7 528 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 SLC35C2Q9NQQ7 365 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 TAS2R9Q9NYW1 312 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 ZNF225Q9UK10 706 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 CBLCQ9ULV8 474 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 PLEKHA6Q9Y2H5 1048 aa13.41□□□□□ -0.26
VPS28-215ENST00000531924 GOLGA8RI6L899 631 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 ANXA4P09525 319 aaPredicted RBP13.4□□□□□ -0.26
VPS28-215ENST00000531924 TCEA1P23193 301 aaKnown RBP13.4□□□□□ -0.26
VPS28-215ENST00000531924 ECHS1P30084 290 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 TIA1P31483 386 aaKnown RBP eCLIP13.4□□□□□ -0.26
VPS28-215ENST00000531924 GSTM5P46439 218 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 PRKAA2P54646 552 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 CORO7P57737 925 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 EEF1A1P68104 462 aaKnown RBP13.4□□□□□ -0.26
VPS28-215ENST00000531924 SORDQ00796 357 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 ZNF155Q12901 538 aaPredicted RBP13.4□□□□□ -0.26
VPS28-215ENST00000531924 EEF1A1P5Q5VTE0 462 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 OR5M10Q6IEU7 315 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 P4HA3Q7Z4N8 544 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 SLC44A2Q8IWA5 706 aaPredicted RBP13.4□□□□□ -0.26
VPS28-215ENST00000531924 CNPY4Q8N129 248 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 WDSUB1Q8N9V3 476 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 OR4K17Q8NGC6 315 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 LINC01560Q8TB33 94 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 ACMSDQ8TDX5 336 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 INTS12Q96CB8 462 aaKnown RBP13.4□□□□□ -0.26
VPS28-215ENST00000531924 CCDC126Q96EE4 140 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 SLC35A4Q96G79 324 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 APIPQ96GX9 242 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 ZFP3Q96NJ6 502 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 SFXN3Q9BWM7 321 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 RBM24Q9BX46 236 aaKnown RBP13.4□□□□□ -0.26
VPS28-215ENST00000531924 EBPLQ9BY08 206 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 SHCBP1LQ9BZQ2 653 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 LIME1Q9H400 295 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 ANKRA2Q9H9E1 313 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 MIEF1Q9NQG6 463 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 TIMM22Q9Y584 194 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 WIF1Q9Y5W5 379 aa13.4□□□□□ -0.26
VPS28-215ENST00000531924 SETD2Q9BYW2 2564 aaPredicted RBP13.4□□□□□ -0.26
VPS28-215ENST00000531924 CLCA1A8K7I4 914 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 CASKO14936 926 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 RIPK2O43353 540 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 DIAPH2O60879 1101 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 COQ9O75208 318 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 GSTA1P08263 222 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 CT45A8P0DMV1 189 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 CT45A9P0DMV2 189 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 GRK2P25098 689 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 SRD5A2P31213 254 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 PTGDSP41222 190 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 DIO3P55073 304 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 RAE1P78406 368 aaKnown RBP13.39□□□□□ -0.27
VPS28-215ENST00000531924 C2orf80Q0P641 193 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 GAB1Q13480 694 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 KEAP1Q14145 624 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 CT45A2Q5DJT8 189 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 CFAP157Q5JU67 520 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 SH2D4BQ5SQS7 431 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 FAM219BQ5XKK7 198 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 POMZP3Q6PJE2 187 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 CAMKMTQ7Z624 323 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 LUZP2Q86TE4 346 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 TGIF2LYQ8IUE0 185 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 GRAMD2AQ8IUY3 354 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 WNT2BQ93097 391 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 NTNG2Q96CW9 530 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 L3HYPDHQ96EM0 354 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 STMN4Q9H169 189 aaPredicted RBP13.39□□□□□ -0.27
VPS28-215ENST00000531924 FOLH1BQ9HBA9 442 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 MID1IP1Q9NPA3 183 aa13.39□□□□□ -0.27
VPS28-215ENST00000531924 SDHAF3Q9NRP4 125 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms