RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ZNF628Q5EBL2 1059 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 FBXW10Q5XX13 1052 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 IFNEQ86WN2 208 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 PLCZ1Q86YW0 608 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 TRIM42Q8IWZ5 723 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 IFT20Q8IY31 132 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 RNF138Q8WVD3 245 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 WNT2BQ93097 391 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 TMCO6Q96DC7 493 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 VSTM2LQ96N03 204 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 DACH2Q96NX9 599 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 COL21A1Q96P44 957 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 HBEGFQ99075 208 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 RBM24Q9BX46 236 aaKnown RBP10.31□□□□□ -0.76
VPS28-214ENST00000531032 ACBD3Q9H3P7 528 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 GALNT8Q9NY28 637 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 TAS2R10Q9NYW0 307 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 CLCF1Q9UBD9 225 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 HEY2Q9UBP5 337 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 VPS29Q9UBQ0 182 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 MCM8Q9UJA3 840 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 MRPS18CQ9Y3D5 142 aaKnown RBP10.31□□□□□ -0.76
VPS28-214ENST00000531032 WIF1Q9Y5W5 379 aa10.31□□□□□ -0.76
VPS28-214ENST00000531032 MED12LQ86YW9 2145 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 TRIM49D1C9J1S8 452 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 MANBAO00462 879 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 TSPAN2O60636 221 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 BCAS2O75934 225 aaPredicted RBP10.3□□□□□ -0.76
VPS28-214ENST00000531032 OR4F21O95013 312 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 KRT6AP02538 564 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 HRGP04196 525 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 KRT6BP04259 564 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 CT45A8P0DMV1 189 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 CT45A9P0DMV2 189 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 DRD2P14416 443 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 CHMP24386 653 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 ECHS1P30084 290 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 HSD17B3P37058 310 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 KRT6CP48668 564 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 CORO7P57737 925 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 PSPHP78330 225 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 SRYQ05066 204 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 CSTF3Q12996 717 aaKnown RBP10.3□□□□□ -0.76
VPS28-214ENST00000531032 KEAP1Q14145 624 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 RASA2Q15283 850 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 CT45A2Q5DJT8 189 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 TCHHL1Q5QJ38 904 aaPredicted RBP10.3□□□□□ -0.76
VPS28-214ENST00000531032 AAGABQ6PD74 315 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 SCIMPQ6UWF3 145 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 CCDC116Q8IYX3 515 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 SAMD14Q8IZD0 417 aaPredicted RBP10.3□□□□□ -0.76
VPS28-214ENST00000531032 CDYL2Q8N8U2 506 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 GBP7Q8N8V2 638 aaPredicted RBP10.3□□□□□ -0.76
VPS28-214ENST00000531032 RDH11Q8TC12 318 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 DTNBP1Q96EV8 351 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 ZNF382Q96SR6 550 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 RHOXF2Q9BQY4 288 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 YIPF4Q9BSR8 244 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 ACPTQ9BZG2 426 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 PIGMQ9H3S5 423 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 FBXL2Q9UKC9 423 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 NFU1Q9UMS0 254 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 DLGAP4Q9Y2H0 992 aa10.3□□□□□ -0.76
VPS28-214ENST00000531032 NAV3Q8IVL0 2385 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 A0A1W2PPR1 153 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 SH3D21A4FU49 640 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 B4DXG7 233 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 PLOD2O00469 737 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 HCRTR2O43614 444 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 PCDH7O60245 1069 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 REM1O75628 298 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 TNFSF13O75888 250 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 ESRRBO95718 433 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 IL3P08700 152 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 SNRPAP09012 282 aaKnown RBP10.29□□□□□ -0.76
VPS28-214ENST00000531032 CHN1P15882 459 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 ZNF708P17019 499 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 CPA2P48052 419 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 STARP49675 285 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 GAS1P54826 345 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 CLDN18P56856 261 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 EEF1A1P68104 462 aaKnown RBP10.29□□□□□ -0.76
VPS28-214ENST00000531032 RAE1P78406 368 aaKnown RBP10.29□□□□□ -0.76
VPS28-214ENST00000531032 GAB1Q13480 694 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 EFR3AQ14156 821 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 ERCC6LQ2NKX8 1250 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 UNC50Q53HI1 259 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 SPIN4Q56A73 249 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 ZNF678Q5SXM1 525 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 LGSNQ5TDP6 509 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 EEF1A1P5Q5VTE0 462 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 PLXDC2Q6UX71 529 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 NPSR1Q6W5P4 371 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 LUZP2Q86TE4 346 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 GCNT2Q8N0V5 402 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 OR9A2Q8NGT5 310 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 SMPDL3BQ92485 455 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 KAT2AQ92830 837 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 INTS12Q96CB8 462 aaKnown RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms