RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CSRP3P50461 194 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 HNRNPFP52597 415 aaKnown RBP4.23□□□□□ -1.73
NUP54-206ENST00000508465 ZNF134P52741 427 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 SOX8P57073 446 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 OR4D2P58180 307 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 RHAGQ02094 409 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 CHIT1Q13231 466 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 NAB1Q13506 487 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 DDX39BQ13838 428 aaKnown RBP4.23□□□□□ -1.73
NUP54-206ENST00000508465 SLC29A2Q14542 456 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 HERC3Q15034 1050 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 FAM83EQ2M2I3 478 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 EIF2S3LQ2VIR3 472 aaKnown RBP4.23□□□□□ -1.73
NUP54-206ENST00000508465 BTBD16Q32M84 506 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 SFT2D3Q587I9 215 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 SGO1Q5FBB7 561 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 IRAK1BP1Q5VVH5 260 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 TMEM205Q6UW68 189 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 ISLR2Q6UXK2 745 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 ABHD13Q7L211 337 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 CUZD1Q86UP6 607 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 MYLK4Q86YV6 388 aaPredicted RBP4.23□□□□□ -1.73
NUP54-206ENST00000508465 KLHDC8AQ8IYD2 350 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 KRT78Q8N1N4 520 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 CA13Q8N1Q1 262 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 TCAIMQ8N3R3 496 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 KIF2BQ8N4N8 673 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 ZADH2Q8N4Q0 377 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 OR1N1Q8NGS0 311 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 NRG4Q8WWG1 115 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 PSMF1Q92530 271 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 TBC1D20Q96BZ9 403 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 SNRNP40Q96DI7 357 aaKnown RBP4.23□□□□□ -1.73
NUP54-206ENST00000508465 MS4A6EQ96DS6 147 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 MVB12AQ96EY5 273 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 SMIM10Q96HG1 83 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 FAR2Q96K12 515 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 CNDP1Q96KN2 507 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 IMMP1LQ96LU5 166 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 QRFPRQ96P65 431 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 PAFAH2Q99487 392 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 WDR77Q9BQA1 342 aaPredicted RBP4.23□□□□□ -1.73
NUP54-206ENST00000508465 ILKAPQ9H0C8 392 aaPredicted RBP4.23□□□□□ -1.73
NUP54-206ENST00000508465 OR51B5Q9H339 312 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 CLMPQ9H6B4 373 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 CNOT10Q9H9A5 744 aaKnown RBP4.23□□□□□ -1.73
NUP54-206ENST00000508465 TCF7L1Q9HCS4 588 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 NECTIN3Q9NQS3 549 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 CCM2LQ9NUG4 571 aaPredicted RBP4.23□□□□□ -1.73
NUP54-206ENST00000508465 ASF1BQ9NVP2 202 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 OPTCQ9UBM4 332 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 TBK1Q9UHD2 729 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 B3GNT3Q9Y2A9 372 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 NTNG1Q9Y2I2 539 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 RNF11Q9Y3C5 154 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 ANGPTL3Q9Y5C1 460 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 COPG1Q9Y678 874 aaKnown RBP4.23□□□□□ -1.73
NUP54-206ENST00000508465 SLC22A7Q9Y694 548 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 IKBKGQ9Y6K9 419 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 SETXQ7Z333 2677 aaKnown RBP4.23□□□□□ -1.73
NUP54-206ENST00000508465 CRYBG3Q68DQ2 2970 aa4.23□□□□□ -1.73
NUP54-206ENST00000508465 NBASA2RRP1 2371 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 LOC102723996A0A087X1L8 192 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 EXOC1LA0A1B0GW35 172 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 A0A1W2PPM1 405 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 ARHGAP10A1A4S6 786 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 SMIM23A6NLE4 172 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 MAGEB17A8MXT2 336 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 K7EPI3 171 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 PSMD12O00232 456 aaPredicted RBP4.22□□□□□ -1.73
NUP54-206ENST00000508465 OR7A17O14581 309 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 RIPK2O43353 540 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 PRKNO60260 465 aaPredicted RBP4.22□□□□□ -1.73
NUP54-206ENST00000508465 KLHL2O95198 593 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 WDPCPO95876 746 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 GBAP04062 536 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 SHBGP04278 402 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 ALPPP05187 535 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 SERPINA7P05543 415 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 UQCRHP07919 91 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 FHP07954 510 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 SNRPAP09012 282 aaKnown RBP4.22□□□□□ -1.73
NUP54-206ENST00000508465 RNH1P13489 461 aaKnown RBP4.22□□□□□ -1.73
NUP54-206ENST00000508465 ATP5A1P25705 553 aaKnown RBP4.22□□□□□ -1.73
NUP54-206ENST00000508465 EEF1DP29692 281 aaKnown RBP4.22□□□□□ -1.73
NUP54-206ENST00000508465 ARL1P40616 181 aaPredicted RBP4.22□□□□□ -1.73
NUP54-206ENST00000508465 CASP2P42575 452 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 SERPINB9P50453 376 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 ALDH18A1P54886 795 aaKnown RBP4.22□□□□□ -1.73
NUP54-206ENST00000508465 CDH13P55290 713 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 EEFSECP57772 596 aaKnown RBP4.22□□□□□ -1.73
NUP54-206ENST00000508465 STXBP1P61764 594 aaKnown RBP4.22□□□□□ -1.73
NUP54-206ENST00000508465 ID2Q02363 134 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 ZNF33BQ06732 778 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 SRSF1Q07955 248 aaKnown RBP eCLIP4.22□□□□□ -1.73
NUP54-206ENST00000508465 ILF2Q12905 390 aaKnown RBP4.22□□□□□ -1.73
NUP54-206ENST00000508465 SLAMF1Q13291 335 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 GTF2H2Q13888 395 aa4.22□□□□□ -1.73
NUP54-206ENST00000508465 DAZAP2Q15038 168 aaPredicted RBP4.22□□□□□ -1.73
NUP54-206ENST00000508465 HIST2H2ACQ16777 129 aaPredicted RBP4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms