RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ZBP1Q9H171 429 aa3.19□□□□□ -1.9
HMGB1P28-201ENST00000507778 RPAP3Q9H6T3 665 aaPredicted RBP3.19□□□□□ -1.9
HMGB1P28-201ENST00000507778 KAT8Q9H7Z6 458 aaKnown RBP3.19□□□□□ -1.9
HMGB1P28-201ENST00000507778 TRPV5Q9NQA5 729 aa3.19□□□□□ -1.9
HMGB1P28-201ENST00000507778 DCAF13Q9NV06 445 aaKnown RBP3.19□□□□□ -1.9
HMGB1P28-201ENST00000507778 DUS2Q9NX74 493 aaKnown RBP3.19□□□□□ -1.9
HMGB1P28-201ENST00000507778 ZNF581Q9P0T4 197 aa3.19□□□□□ -1.9
HMGB1P28-201ENST00000507778 ANKMY1Q9P2S6 941 aa3.19□□□□□ -1.9
HMGB1P28-201ENST00000507778 AURKCQ9UQB9 309 aa3.19□□□□□ -1.9
HMGB1P28-201ENST00000507778 COL5A2P05997 1499 aaPredicted RBP3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 IGHV3OR16-12A0A075B7B8 117 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 RNF222A6NCQ9 220 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 FBLL1A6NHQ2 334 aaKnown RBP3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 SRRM5B3KS81 715 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 E9PAM4 449 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 H0YL77 283 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 ALOX15BO15296 676 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 PHF1O43189 567 aaPredicted RBP3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 IGHV3-9P01782 118 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 CA3P07451 260 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 ANXA4P09525 319 aaPredicted RBP3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 FAM200BP0CF97 657 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 GSTT2P0CG29 244 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 GSTT2BP0CG30 244 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 PVRP15151 417 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 GATA2P23769 480 aaPredicted RBP3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 PTGER3P43115 390 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 HTR5AP47898 357 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 METAP1P53582 386 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 HMGCS2P54868 508 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 POLR2FP61218 127 aaKnown RBP3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 RFTN1Q14699 578 aaPredicted RBP3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 ZIC1Q15915 447 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 KRTAP27-1Q3LI81 207 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 HSP90AA5PQ58FG0 334 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 MS4A13Q5J8X5 152 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 ARSKQ6UWY0 536 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 ZNF562Q6V9R5 426 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 Q7L0L9 218 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 LPCAT2Q7L5N7 544 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 ERC1Q8IUD2 1116 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 CCDC36Q8IYA8 594 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 SELENOMQ8WWX9 145 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 DNAJA3Q96EY1 480 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 ZBED6CLQ96FA7 236 aaPredicted RBP3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 C16orf45Q96MC5 204 aaPredicted RBP3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 CCSER1Q9C0I3 900 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 DPH5Q9H2P9 285 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 SENP1Q9P0U3 644 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 DHRS4-AS1Q9P1J3 65 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 ARMCX1Q9P291 453 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 ATP6V1HQ9UI12 483 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 ISY1Q9ULR0 285 aaKnown RBP3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 FOXJ3Q9UPW0 622 aa3.18□□□□□ -1.9
HMGB1P28-201ENST00000507778 TRAV9-2A0A087WT02 112 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 TRBV7-9A0A0J9YWB2 115 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 WASH3PC4AMC7 463 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 GPRIN2O60269 458 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 SRPX2O60687 465 aaPredicted RBP3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 KBTBD11O94819 623 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 VENTXO95231 258 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 DIRAS3O95661 229 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 PIGRP01833 764 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 WNT2P09544 360 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 PAICSP22234 425 aaKnown RBP3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 DPP4P27487 766 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 AXLP30530 894 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 HMGCLP35914 325 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 STK19P49842 368 aaPredicted RBP3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 KRTAP10-6P60371 365 aaPredicted RBP3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 PRKCEQ02156 737 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 ZNF33BQ06732 778 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 LTB4RQ15722 352 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 SLC1A5Q15758 541 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 PPP1R3AQ16821 1122 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 MICAQ29983 383 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 TCTEX1D4Q5JR98 221 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 FBXL22Q6P050 247 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 PNCKQ6P2M8 343 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 WASH2PQ6VEQ5 465 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 ZNF600Q6ZNG1 722 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 PRSS48Q7RTY5 328 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 CEACAM19Q7Z692 300 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 ERICH1Q86X53 443 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 NFAM1Q8NET5 270 aaPredicted RBP3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 ZNF671Q8TAW3 534 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 AGAP11Q8TF27 550 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 ART4Q93070 314 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 PIWIL1Q96J94 861 aaKnown RBP3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 C1orf147Q96MC9 270 aaPredicted RBP3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 C9orf85Q96MD7 179 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 TIGARQ9NQ88 270 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 CUTCQ9NTM9 273 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 CLEC5AQ9NY25 188 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 CHMP2BQ9UQN3 213 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 RNF115Q9Y4L5 304 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 GRIN2DO15399 1336 aa3.17□□□□□ -1.9
HMGB1P28-201ENST00000507778 A0A087WWV3 80 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms