RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 KRTCAP3Q53RY4 240 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 ZNF766Q5HY98 468 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 SAMD4BQ5PRF9 694 aaKnown RBP7.47□□□□□ -1.21
SCN1A-207ENST00000507401 PRAMEF9Q5VWM5 478 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 SLC25A25Q6KCM7 469 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 TRIM40Q6P9F5 258 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 ABHD17CQ6PCB6 329 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 MAMDC2Q7Z304 686 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-207ENST00000507401 VN1R5Q7Z5H4 357 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 AQP12AQ8IXF9 295 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 LAS2Q8IYD9 372 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 POU5F2Q8N7G0 328 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 TMEM178AQ8NBL3 297 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 MDS2Q8NDY4 140 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 B3GNT7Q8NFL0 401 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 FBXO27Q8NI29 283 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 GRPEL2Q8TAA5 225 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 THAP3Q8WTV1 239 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-207ENST00000507401 UBTD2Q8WUN7 234 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 CCDC124Q96CT7 223 aaKnown RBP7.47□□□□□ -1.21
SCN1A-207ENST00000507401 SCMH1Q96GD3 660 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 TXNDC15Q96J42 360 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 MAGEB10Q96LZ2 347 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-207ENST00000507401 COG8Q96MW5 612 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 RDH12Q96NR8 316 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 ATOH8Q96SQ7 321 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 NPAS2Q99743 824 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 TBCDQ9BTW9 1192 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 DEFB126Q9BYW3 111 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 OR2B2Q9GZK3 357 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 NDEL1Q9GZM8 345 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 CDCP1Q9H5V8 836 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 RPF2Q9H7B2 306 aaKnown RBP7.47□□□□□ -1.21
SCN1A-207ENST00000507401 TCF7L2Q9NQB0 619 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 NECTIN3Q9NQS3 549 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 PRDM7Q9NQW5 492 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 IGSF5Q9NSI5 407 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 DAPP1Q9UN19 280 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 OSGIN2Q9Y236 505 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 UGT2A1Q9Y4X1 527 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 ANGPTL3Q9Y5C1 460 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 UNC79Q9P2D8 2635 aa7.47□□□□□ -1.21
SCN1A-207ENST00000507401 SVILO95425 2214 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 TCRBV3S1A0A5B6 114 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 HMX2A2RU54 273 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 ASPDHA6ND91 283 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 TRPC5OSA6NMA1 111 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 C4orf51C9J302 202 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 GOLGA8RI6L899 631 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 CYR61O00622 381 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 KLK8O60259 260 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 PLIN3O60664 434 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 NEURL1O76050 574 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 MLYCDO95822 493 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 F10P00742 488 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 C2P06681 752 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 RNF224P0DH78 156 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 COL6A2P12110 1019 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 MTHFD2P13995 350 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 EPB42P16452 691 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 EPORP19235 508 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 MAOAP21397 527 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 EEF1DP29692 281 aaKnown RBP7.46□□□□□ -1.22
SCN1A-207ENST00000507401 STT3AP46977 705 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 CYB561P49447 251 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 GPR143P51810 404 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 LIM2P55344 173 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 RAB38P57729 211 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 MLF1P58340 268 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 STX1BP61266 288 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 MRPS22P82650 360 aaKnown RBP7.46□□□□□ -1.22
SCN1A-207ENST00000507401 RBPJQ06330 500 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 CHIT1Q13231 466 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 TOP3AQ13472 1001 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-207ENST00000507401 OR1C1Q15619 314 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 NHSL2Q5HYW2 709 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 TCHHL1Q5QJ38 904 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-207ENST00000507401 C6orf52Q5T4I8 152 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 LIPJQ5W064 366 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 SPINK14Q6IE38 97 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 MED27Q6P2C8 311 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 ZBTB49Q6ZSB9 765 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 FRMD7Q6ZUT3 714 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 CMC1Q7Z7K0 106 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 SLC34A3Q8N130 599 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 TMEM132CQ8N3T6 1108 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 AMER2Q8N7J2 671 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 APCDD1LQ8NCL9 501 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 OR7G1Q8NGA0 311 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 LILRB4Q8NHJ6 448 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 ISL2Q96A47 359 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 ESAMQ96AP7 390 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 NXNL1Q96CM4 212 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 CMTM7Q96FZ5 175 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 SIGLEC12Q96PQ1 595 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 KCNC2Q96PR1 638 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 SNX18Q96RF0 628 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 RBCK1Q9BYM8 510 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 RAD21L1Q9H4I0 556 aa7.46□□□□□ -1.22
SCN1A-207ENST00000507401 ALG9Q9H6U8 611 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms