RNA–Protein interactions for RNA: ENST00000496332.5

THBS3-208, Transcript of thrombospondin 3, human

TSL 3

Gene THBS3, Length 839 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
THBS3-208	ENST00000496332	NEFH	P12036	1026 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	GABRA1	P14867	456 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	ELAVL4	P26378	380 aa	Known RBP	10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	PTPN6	P29350	595 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	NTS	P30990	170 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	KRT20	P35900	424 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	MC3R	P41968	323 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	PSPH	P78330	225 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	ZNF155	Q12901	538 aa	Predicted RBP	10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	EIPR1	Q53HC9	387 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	TMEM107	Q6UX40	140 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	NPSR1	Q6W5P4	371 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	RNF165	Q6ZSG1	346 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	ZCCHC23	Q6ZST2	131 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	LARP4	Q71RC2	724 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	SLC44A2	Q8IWA5	706 aa	Predicted RBP	10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	DDIAS	Q8IXT1	998 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	ULK2	Q8IYT8	1036 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	CLYBL	Q8N0X4	340 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	OR4N2	Q8NGD1	307 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	GFM2	Q969S9	779 aa	Known RBP	10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	TMCO6	Q96DC7	493 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	SLC35A4	Q96G79	324 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	AMDHD1	Q96NU7	426 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	TIMP4	Q99727	224 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	SPOCK3	Q9BQ16	436 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	TMEM109	Q9BVC6	243 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	PARD6B	Q9BYG5	372 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	TRIM8	Q9BZR9	551 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	GLIPR2	Q9H4G4	154 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	KCNJ16	Q9NPI9	418 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	C19orf53	Q9UNZ5	99 aa	Predicted RBP	10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	MAPRE3	Q9UPY8	281 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	SLC6A5	Q9Y345	797 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	PCDHGB3	Q9Y5G1	929 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332	DCHS2	Q6V1P9	2916 aa		10.81	□□□□□ -0.68
THBS3-208	ENST00000496332		A0A0G2JNJ9	132 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	UPK1A	O00322	258 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	PLOD2	O00469	737 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	PIP5K1B	O14986	540 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	SNPH	O15079	494 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	LSM1	O15116	133 aa	Known RBP	10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	AKAP10	O43572	662 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	TSPAN2	O60636	221 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	ABCB7	O75027	752 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	TOX	O94900	526 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	SLITRK5	O94991	958 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	SDC1	P18827	310 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	IL12B	P29460	328 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	ADH7	P40394	386 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	RPL38	P63173	70 aa	Known RBP	10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	CRYZ	Q08257	329 aa	Known RBP	10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	EFR3A	Q14156	821 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	UGT3A2	Q3SY77	523 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	GALNTL6	Q49A17	601 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	RFTN2	Q52LD8	501 aa	Predicted RBP	10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	WIPI1	Q5MNZ9	446 aa	Predicted RBP	10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	SH2D4B	Q5SQS7	431 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	VASN	Q6EMK4	673 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	ANKRD26P1	Q6NSI1	321 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	MEX3B	Q6ZN04	569 aa	Known RBP	10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	GDF7	Q7Z4P5	450 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	YRDC	Q86U90	279 aa	Known RBP	10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	HOMEZ	Q8IX15	550 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	ZNF295-AS1	Q8N0V1	137 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	MREG	Q8N565	214 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	WDSUB1	Q8N9V3	476 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	AGR3	Q8TD06	166 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	TWIST2	Q8WVJ9	160 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	ELP4	Q96EB1	424 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	FCRL1	Q96LA6	429 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	TSSK3	Q96PN8	268 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	CCT7	Q99832	543 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	ENKD1	Q9H0I2	346 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	SERHL	Q9NQF3	203 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	DDX18	Q9NVP1	670 aa	Known RBP	10.8	□□□□□ -0.68
THBS3-208	ENST00000496332		Q9UFV3	132 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	BAIAP2L1	Q9UHR4	511 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	OR10H1	Q9Y4A9	318 aa		10.8	□□□□□ -0.68
THBS3-208	ENST00000496332	AHRR	A9YTQ3	701 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	FAM47E-STBD1	D6RA91	191 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	TYROBP	O43914	113 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	CBR3	O75828	277 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	PSMG1	O95456	288 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	BPGM	P07738	259 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	BMP7	P18075	431 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	SERPINB5	P36952	375 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	ZFP36L2	P47974	494 aa	Known RBP	10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	PNLIPRP2	P54317	469 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	MRPS22	P82650	360 aa	Known RBP	10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	PSG6	Q00889	435 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	TFF3	Q07654	80 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	ZNF844	Q08AG5	666 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	KRT71	Q3SY84	523 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	NHSL2	Q5HYW2	709 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	ZNF551	Q7Z340	670 aa	Predicted RBP	10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	LIX1L	Q8IVB5	337 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	OR2L13	Q8N349	312 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	ACBD4	Q8NC06	268 aa		10.79	□□□□□ -0.68
THBS3-208	ENST00000496332	FAM83F	Q8NEG4	500 aa	Predicted RBP	10.79	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 39 ms