RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 CYB561P49447 251 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 TMED10P49755 219 aaKnown RBP13.45□□□□□ -0.26
BRCA1-223ENST00000494123 KHKP50053 298 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 ST13P50502 369 aaKnown RBP13.45□□□□□ -0.26
BRCA1-223ENST00000494123 TRMT5Q32P41 509 aaKnown RBP13.45□□□□□ -0.26
BRCA1-223ENST00000494123 NPSR1Q6W5P4 371 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 SLC34A3Q8N130 599 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 ZADH2Q8N4Q0 377 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 FITM2Q8N6M3 262 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 SLC16A11Q8NCK7 471 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 OR7D2Q96RA2 312 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 RNF32Q9H0A6 362 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 OR51I1Q9H343 314 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 RAD21L1Q9H4I0 556 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 ZBTB20Q9HC78 741 aaPredicted RBP13.45□□□□□ -0.26
BRCA1-223ENST00000494123 RYDENQ9NUL5 291 aaKnown RBP13.45□□□□□ -0.26
BRCA1-223ENST00000494123 GID8Q9NWU2 228 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 HPF1Q9NWY4 346 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 VAPAQ9P0L0 249 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 MRTO4Q9UKD2 239 aaKnown RBP13.45□□□□□ -0.26
BRCA1-223ENST00000494123 PCDHGB3Q9Y5G1 929 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 NPFFR2Q9Y5X5 522 aa13.45□□□□□ -0.26
BRCA1-223ENST00000494123 TNRC6AQ8NDV7 1962 aaKnown RBP13.44□□□□□ -0.26
BRCA1-223ENST00000494123 CACNA1GO43497 2377 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 OR5H15A6NDH6 313 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 CLIC1O00299 241 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 AIM2O14862 343 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 TO15178 435 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 SOX30O94993 753 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 NKX2-2O95096 273 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 NADKO95544 446 aaPredicted RBP13.44□□□□□ -0.26
BRCA1-223ENST00000494123 ABCD3P28288 659 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 CRATP43155 626 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 HLCSP50747 726 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 DUSP5Q16690 384 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 CYP27C1Q4G0S4 372 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 LACTB2Q53H82 288 aaPredicted RBP13.44□□□□□ -0.26
BRCA1-223ENST00000494123 FAM91A1Q658Y4 838 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 TNFAIP8L2Q6P589 184 aaPredicted RBP13.44□□□□□ -0.26
BRCA1-223ENST00000494123 IGFL2Q6UWQ7 119 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 IL20RBQ6UXL0 311 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 DLEU7Q6UYE1 221 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 ASB18Q6ZVZ8 466 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 HPS6Q86YV9 775 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 DND1Q8IYX4 353 aaKnown RBP13.44□□□□□ -0.26
BRCA1-223ENST00000494123 CYP4Z2PQ8N1L4 340 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 OR5D16Q8NGK9 328 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 PIK3R3Q92569 461 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 TMBIM1Q969X1 311 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 OMA1Q96E52 524 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 STACQ99469 402 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 CGREF1Q99674 301 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.44□□□□□ -0.26
BRCA1-223ENST00000494123 PIGUQ9H490 435 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 EFCAB1Q9HAE3 211 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 ZNF71Q9NQZ8 489 aaPredicted RBP13.44□□□□□ -0.26
BRCA1-223ENST00000494123 DUSP22Q9NRW4 184 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 SLC25A37Q9NYZ2 338 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 MAP10Q9P2G4 905 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 TAGLN3Q9UI15 199 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 CBLCQ9ULV8 474 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 LHX6Q9UPM6 363 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 CORO2BQ9UQ03 480 aa13.44□□□□□ -0.26
BRCA1-223ENST00000494123 EVPLLA8MZ36 301 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 CDK2AP1O14519 115 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 ZNF354AO60765 605 aaPredicted RBP13.43□□□□□ -0.26
BRCA1-223ENST00000494123 REM1O75628 298 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 OR6B1O95007 311 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 AGR2O95994 175 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 NPPAP01160 153 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 PDGFAP04085 211 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 SFTPCP11686 197 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 HOXB9P17482 250 aaPredicted RBP13.43□□□□□ -0.26
BRCA1-223ENST00000494123 IL12BP29460 328 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 TRHRP34981 398 aaPredicted RBP13.43□□□□□ -0.26
BRCA1-223ENST00000494123 MAP3K8P41279 467 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 RFX3P48380 749 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 PSMD4P55036 377 aaKnown RBP13.43□□□□□ -0.26
BRCA1-223ENST00000494123 POU6F2P78424 691 aaPredicted RBP13.43□□□□□ -0.26
BRCA1-223ENST00000494123 TXNL4AP83876 142 aaKnown RBP13.43□□□□□ -0.26
BRCA1-223ENST00000494123 TUBA3CQ13748 450 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 DECR1Q16698 335 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.43□□□□□ -0.26
BRCA1-223ENST00000494123 ATAD3BQ5T9A4 648 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 TUBA3EQ6PEY2 450 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 MSRB3Q8IXL7 192 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 GPALPP1Q8IXQ4 340 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 HORMAD2Q8N7B1 307 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 FAM13CQ8NE31 585 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 OR4N2Q8NGD1 307 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 MIPOL1Q8TD10 442 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 HAS2Q92819 552 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 HOXB13Q92826 284 aaPredicted RBP13.43□□□□□ -0.26
BRCA1-223ENST00000494123 CDS1Q92903 461 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 SPACA9Q96E40 222 aaPredicted RBP13.43□□□□□ -0.26
BRCA1-223ENST00000494123 RMND5BQ96G75 393 aaPredicted RBP13.43□□□□□ -0.26
BRCA1-223ENST00000494123 EXD2Q9NVH0 621 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 GIN1Q9NXP7 522 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 LRFN1Q9P244 771 aa13.43□□□□□ -0.26
BRCA1-223ENST00000494123 TRBV5-3A0A0A0MS03 114 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms