RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SLC35F1Q5T1Q4 408 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 KLHDC8AQ8IYD2 350 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 NEDD4LQ96PU5 975 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 OR51I1Q9H343 314 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 LRRN3Q9H3W5 708 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 PLSCR3Q9NRY6 295 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 RP2O75695 350 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 MLLT3P42568 568 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 CDC20Q12834 499 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 BTN1A1Q13410 526 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 NNATQ16517 81 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 FAM78AQ5JUQ0 283 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 UNC5DQ6UXZ4 953 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 ZNF300Q96RE9 604 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 DOK1Q99704 481 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 BHLHE41Q9C0J9 482 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 ZNF385DQ9H6B1 395 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 CXXC1Q9P0U4 656 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 H3BQ06 376 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 SMAD9O15198 467 aaKnown RBP15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 DDOSTP39656 456 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 GRK6P43250 576 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 CLDN2P57739 230 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 SIM1P81133 766 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 AAK1Q2M2I8 961 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 ALG11Q2TAA5 492 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 SLC27A4Q6P1M0 643 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 ASPGQ86U10 573 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 OAFQ86UD1 273 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 UBQLNLQ8IYU4 475 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 CCDC115Q96NT0 180 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 EPYCQ99645 322 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 C11orf54Q9H0W9 315 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 NMNAT1Q9HAN9 279 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 TAS2R3Q9NYW6 316 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 MGAT4CQ9UBM8 478 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 ALG5Q9Y673 324 aa15.44■□□□□ 0.06
CCDC88B-209ENST00000494080 A0A1W2PPK0 400 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 SMLR1H3BR10 107 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 SELENOWP63302 87 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 XAF1Q6GPH4 301 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 KLBQ86Z14 1044 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 ENTHD1Q8IYW4 607 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 DNAJC5GQ8N7S2 189 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 DGAT2Q96PD7 388 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 NDC1Q9BTX1 674 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 DUSP21Q9H596 190 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 TAS2R10Q9NYW0 307 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 KLK4Q9Y5K2 254 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 ENPP4Q9Y6X5 453 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 A0A1B0GVC2 190 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 A6NIN4 97 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 IGLV3-27P01718 113 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 PDGFAP04085 211 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 EN2P19622 333 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 IL12BP29460 328 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 SUOXP51687 545 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 NUP43Q8NFH3 380 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 TMEM19Q96HH6 336 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 CSF3RQ99062 836 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 FAM83CQ9BQN1 747 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 RHNO1Q9BSD3 238 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 MVB12BQ9H7P6 319 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 MRPL15Q9P015 296 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 GABRR3A8MPY1 467 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 ANHXE9PGG2 379 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 IL1RNP18510 177 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 HTR3AP46098 478 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 NKX3-2P78367 333 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 RGNQ15493 299 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 PRPF38BQ5VTL8 546 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 BHLHA9Q7RTU4 235 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 SERPINA11Q86U17 422 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 SYNPOQ8N3V7 929 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 ZNF354BQ96LW1 612 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 MCCC1Q96RQ3 725 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 TTTY10Q9BZA0 68 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 QPCTLQ9NXS2 382 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 GPR52Q9Y2T5 361 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 TRIP11Q15643 1979 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 TCRBV5S2A0A599 114 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 CAV3P56539 151 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 NDUFAF5Q5TEU4 345 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 ARSKQ6UWY0 536 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 SPPL3Q8TCT6 385 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 PDFQ9HBH1 243 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 HPF1Q9NWY4 346 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 GLTPQ9NZD2 209 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 COPS7AQ9UBW8 275 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 A3GALT2U3KPV4 340 aa15.43■□□□□ 0.06
CCDC88B-209ENST00000494080 OR2AT4A6NND4 320 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 WASHC1A8K0Z3 465 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 TARM1B6A8C7 271 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 FAAHO00519 579 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 HOXC11O43248 304 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 AGR2O95994 175 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 CR2P20023 1033 aa15.42■□□□□ 0.06
CCDC88B-209ENST00000494080 ZNF791Q3KP31 576 aaPredicted RBP15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms