RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 NIPAL2Q9H841 368 aa10.17□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GDE1Q9NZC3 331 aa10.17□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TRBC2A0A5B9 178 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 FXYD1O00168 92 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GREM1O60565 184 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MLLT3P42568 568 aaPredicted RBP10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CAPZA2P47755 286 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 HBA1P69905 142 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GNA13Q14344 377 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CTU2Q2VPK5 515 aaKnown RBP10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PGBD2Q6P3X8 592 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TMEM107Q6UX40 140 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 Q6ZS52 159 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CYP4Z2PQ8N1L4 340 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 LMX1AQ8TE12 382 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 DUS3LQ96G46 650 aaKnown RBP10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 LRIG1Q96JA1 1093 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 QRFPRQ96P65 431 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SLC38A3Q99624 504 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 FNDC11Q9BVV2 318 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZNF416Q9BWM5 594 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 DPAGT1Q9H3H5 408 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 RETREG1Q9H6L5 497 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 FGF22Q9HCT0 170 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 IFT46Q9NQC8 304 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MED11Q9P086 117 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CD207Q9UJ71 328 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PCM1Q15154 2024 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 EPOPA6NHQ4 379 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 LYRM1O43325 122 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PRKNO60260 465 aaPredicted RBP10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MPZL2O60487 215 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CAPNS1P04632 268 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PAICSP22234 425 aaKnown RBP10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PTX3P26022 381 aaPredicted RBP10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 KDELR2P33947 212 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PRLHRP49683 370 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SUOXP51687 545 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PPP2CBP62714 309 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PPP2CAP67775 309 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 HTRA4P83105 476 aaPredicted RBP10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TGM3Q08188 693 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 IDNKQ5T6J7 187 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 BCL2L15Q5TBC7 163 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 LIPKQ5VXJ0 399 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 RNF44Q7L0R7 432 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZNF367Q7RTV3 350 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 NLGN4XQ8N0W4 816 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 LGI4Q8N135 537 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZBTB44Q8NCP5 570 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PHOSPHO2Q8TCD6 241 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 DNASE1L2Q92874 299 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PRR14Q9BWN1 585 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ABCG5Q9H222 651 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SNX11Q9Y5W9 270 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 FAM227AF5H4B4 570 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 LILRB3O75022 631 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MATN4O95460 622 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CERS1P27544 350 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TLX1P31314 330 aaPredicted RBP10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 LIPAP38571 399 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SLC19A1P41440 591 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 STX4Q12846 297 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ADAM15Q13444 863 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 VMACQ2NL98 169 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SOWAHCQ53LP3 525 aaPredicted RBP10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ALG1LQ6GMV1 187 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 FTMTQ8N4E7 242 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CEP76Q8TAP6 659 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 KLHL6Q8WZ60 621 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 METTL2AQ96IZ6 378 aaKnown RBP10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 OR4K3Q96R72 315 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GAL3ST4Q96RP7 486 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 REEP4Q9H6H4 257 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 C12orf10Q9HB07 376 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PPT2Q9UMR5 302 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MYO16Q9Y6X6 1858 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CPED1A4D0V7 1026 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 OR2W5A6NFC9 320 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CAPN5O15484 640 aaPredicted RBP10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 UGT2B17O75795 530 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CCNDBP1O95273 360 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 AKT2P31751 481 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TGFBR2P37173 567 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 RGS6P49758 472 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SMCO1Q147U7 214 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SLC14A2Q15849 920 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SPIN4Q56A73 249 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 LIPJQ5W064 366 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 METTL2BQ6P1Q9 378 aaKnown RBP10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ANKRD53Q8N9V6 530 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 OR52E1Q8NGJ3 308 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MRGPRX3Q96LB0 322 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 OR2M4Q96R27 311 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SLC6A16Q9GZN6 736 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MCCC2Q9HCC0 563 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ALG5Q9Y673 324 aa10.16□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 BPTFQ12830 3046 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TRIOO75962 3097 aa10.15□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CLCA1A8K7I4 914 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms