RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 RNF219Q5W0B1 726 aaPredicted RBP11.03□□□□□ -0.64
HDAC4-210ENST00000493582 SFRP4Q6FHJ7 346 aaPredicted RBP11.03□□□□□ -0.64
HDAC4-210ENST00000493582 PODNL1Q6PEZ8 512 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 HMGN2P46Q86SG4 172 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 BVESQ8NE79 360 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 SPRYD4Q8WW59 207 aaPredicted RBP11.03□□□□□ -0.64
HDAC4-210ENST00000493582 SLC5A11Q8WWX8 675 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 ASB11Q8WXH4 323 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 CNOT9Q92600 299 aaKnown RBP11.03□□□□□ -0.64
HDAC4-210ENST00000493582 FGF11Q92914 225 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 ANXA2P2A6NMY6 339 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 GMDSO60547 372 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 CH25HO95992 272 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 SRPRAP08240 638 aaKnown RBP11.03□□□□□ -0.64
HDAC4-210ENST00000493582 HLA-FP30511 346 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 SLC6A11P48066 632 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 SIM1P81133 766 aaPredicted RBP11.03□□□□□ -0.64
HDAC4-210ENST00000493582 CLEC12AQ5QGZ9 265 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 KIAA1161Q6NSJ0 714 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 REEP3Q6NUK4 255 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 CAMKMTQ7Z624 323 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 NXPE1Q8N323 547 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 OR8K3Q8NH51 312 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 SLC38A5Q8WUX1 472 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 CHFRQ96EP1 664 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 MED8Q96G25 268 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 PDXPQ96GD0 296 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 PELOQ9BRX2 385 aaKnown RBP11.03□□□□□ -0.64
HDAC4-210ENST00000493582 TMEM168Q9H0V1 697 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 ISYNA1Q9NPH2 558 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 COPZ2Q9P299 210 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 CFAP97Q9P2B7 532 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 GULP1Q9UBP9 304 aa11.03□□□□□ -0.64
HDAC4-210ENST00000493582 NLRC5Q86WI3 1866 aa11.02□□□□□ -0.64
HDAC4-210ENST00000493582 TUBAL3A6NHL2 446 aa11.02□□□□□ -0.64
HDAC4-210ENST00000493582 SEPT4O43236 478 aa11.02□□□□□ -0.64
HDAC4-210ENST00000493582 FZD7O75084 574 aa11.02□□□□□ -0.64
HDAC4-210ENST00000493582 B3GALNT1O75752 331 aa11.02□□□□□ -0.64
HDAC4-210ENST00000493582 LDOC1O95751 146 aaPredicted RBP11.02□□□□□ -0.64
HDAC4-210ENST00000493582 RPS13P62277 151 aaKnown RBP11.02□□□□□ -0.64
HDAC4-210ENST00000493582 ESPNLQ6ZVH7 1005 aa11.02□□□□□ -0.64
HDAC4-210ENST00000493582 IQCHQ86VS3 1027 aa11.02□□□□□ -0.64
HDAC4-210ENST00000493582 GOT1L1Q8NHS2 421 aaPredicted RBP11.02□□□□□ -0.64
HDAC4-210ENST00000493582 ACOT12Q8WYK0 555 aa11.02□□□□□ -0.64
HDAC4-210ENST00000493582 YIPF5Q969M3 257 aa11.02□□□□□ -0.64
HDAC4-210ENST00000493582 REEP4Q9H6H4 257 aa11.02□□□□□ -0.64
HDAC4-210ENST00000493582 C5orf58C9J3I9 102 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 SIX6O95475 246 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 WNT1P04628 370 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 FGF2P09038 288 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 TYMPP19971 482 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 RBMS1P29558 406 aaKnown RBP11.02□□□□□ -0.65
HDAC4-210ENST00000493582 HNMTP50135 292 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 MAZP56270 477 aaKnown RBP11.02□□□□□ -0.65
HDAC4-210ENST00000493582 DEFA5Q01523 94 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 SNTB2Q13425 540 aaKnown RBP11.02□□□□□ -0.65
HDAC4-210ENST00000493582 LIPJQ5W064 366 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 PRSS45Q7RTY3 260 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 FGD2Q7Z6J4 655 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 MMP21Q8N119 569 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 OR4K5Q8NGD3 323 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 FOXJ1Q92949 421 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 TEFMQ96QE5 360 aaKnown RBP11.02□□□□□ -0.65
HDAC4-210ENST00000493582 BHLHE41Q9C0J9 482 aaPredicted RBP11.02□□□□□ -0.65
HDAC4-210ENST00000493582 ISG20L2Q9H9L3 353 aaKnown RBP11.02□□□□□ -0.65
HDAC4-210ENST00000493582 EXOSC1Q9Y3B2 195 aaKnown RBP11.02□□□□□ -0.65
HDAC4-210ENST00000493582 KLF2Q9Y5W3 355 aaPredicted RBP11.02□□□□□ -0.65
HDAC4-210ENST00000493582 CKAP5Q14008 2032 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.02□□□□□ -0.65
HDAC4-210ENST00000493582 TRBV5-4A0A0C4DH59 114 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 SERTM1A2A2V5 107 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 K7ERQ8 282 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 SMAD6O43541 496 aaKnown RBP11.02□□□□□ -0.65
HDAC4-210ENST00000493582 TIA1P31483 386 aaKnown RBP eCLIP11.02□□□□□ -0.653e-6■■■□□ 15.8
HDAC4-210ENST00000493582 THBS2P35442 1172 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 CSKP41240 450 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 RHOAP61586 193 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 CDK5Q00535 292 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 B4GALNT1Q00973 533 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 ZNF177Q13360 481 aaPredicted RBP11.02□□□□□ -0.65
HDAC4-210ENST00000493582 SLC25A30Q5SVS4 291 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 HBMQ6B0K9 141 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 TSPAN33Q86UF1 283 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 THOC6Q86W42 341 aaKnown RBP11.02□□□□□ -0.65
HDAC4-210ENST00000493582 ZNF454Q8N9F8 522 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 FBXO15Q8NCQ5 510 aaPredicted RBP11.02□□□□□ -0.65
HDAC4-210ENST00000493582 SYNDIG1Q9H7V2 258 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 CYB5R1Q9UHQ9 305 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 NPTNQ9Y639 398 aa11.02□□□□□ -0.65
HDAC4-210ENST00000493582 NFKBIEO00221 500 aa11.01□□□□□ -0.65
HDAC4-210ENST00000493582 NPR2P20594 1047 aa11.01□□□□□ -0.65
HDAC4-210ENST00000493582 HNF1BP35680 557 aa11.01□□□□□ -0.65
HDAC4-210ENST00000493582 ATP6V1E1P36543 226 aa11.01□□□□□ -0.65
HDAC4-210ENST00000493582 CDH4P55283 916 aa11.01□□□□□ -0.65
HDAC4-210ENST00000493582 BEX3Q00994 111 aa11.01□□□□□ -0.65
HDAC4-210ENST00000493582 FLI1Q01543 452 aaPredicted RBP11.01□□□□□ -0.65
HDAC4-210ENST00000493582 MLLT1Q03111 559 aaPredicted RBP11.01□□□□□ -0.65
HDAC4-210ENST00000493582 SLC36A4Q6YBV0 504 aa11.01□□□□□ -0.65
HDAC4-210ENST00000493582 RFLNAQ6ZTI6 216 aa11.01□□□□□ -0.65
HDAC4-210ENST00000493582 BTN2A1Q7KYR7 527 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms