RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 NAT14Q8WUY8 206 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ZNRF4Q8WWF5 429 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 METTL21AQ8WXB1 218 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 MRPS27Q92552 414 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PRCCQ92733 491 aaPredicted RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SLCO2A1Q92959 643 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ARL5BQ96KC2 179 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 DNAJC1Q96KC8 554 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CNDP2Q96KP4 475 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ATP6V1G3Q96LB4 118 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 OLFM3Q96PB7 478 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CCT8L2Q96SF2 557 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 LPAR4Q99677 370 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PIGQQ9BRB3 760 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PYGO2Q9BRQ0 406 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CENPKQ9BS16 269 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CCDC28BQ9BUN5 200 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 EDEM2Q9BV94 578 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 TIPINQ9BVW5 301 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SPATA16Q9BXB7 569 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 NUSAP1Q9BXS6 441 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 WWTR1Q9GZV5 400 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 RHBGQ9H310 441 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 RNF41Q9H4P4 317 aaPredicted RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 THAP9Q9H5L6 903 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PRORYQ9H606 182 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SP140LQ9H930 580 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 MED20Q9H944 212 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CNOT10Q9H9A5 744 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 VIPAS39Q9H9C1 493 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SIAEQ9HAT2 523 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 Q9N2K0 584 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 TUFT1Q9NNX1 390 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 B3GAT2Q9NPZ5 323 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SAMSN1Q9NSI8 373 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PAQR5Q9NXK6 330 aaPredicted RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 NKIRAS2Q9NYR9 191 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 NUDT4Q9NZJ9 180 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 NDUFA13Q9P0J0 144 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ADAM22Q9P0K1 906 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 TXNDC16Q9P2K2 825 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 KCNN3Q9UGI6 736 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 FETUBQ9UGM5 382 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ASIC3Q9UHC3 531 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 ATP6V1HQ9UI12 483 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SH3BGRL2Q9UJC5 107 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CLEC4AQ9UMR7 237 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 DUSP12Q9UNI6 340 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 LRRC42Q9Y546 428 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SELENOKQ9Y6D0 94 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 PLXNB2O15031 1838 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 SIP14410 1827 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 TLN1Q9Y490 2541 aaKnown RBP1.86□□□□□ -2.11
HMGB1-208ENST00000490788 CDK5RAP2Q96SN8 1893 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 DOPEY2Q9Y3R5 2298 aa1.86□□□□□ -2.11
HMGB1-208ENST00000490788 MED23Q9ULK4 1368 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 PTPRQQ9UMZ3 2332 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 PSME4Q14997 1843 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ECM29Q5VYK3 1845 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 A0A087WV48 116 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 C15orf38-AP3S2A0A0A6YYH1 394 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 GOLGA8QA0A0J9YX86 632 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 A0A1B0GWJ7 208 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 TRBC2A0A5B9 178 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 FAM170AA1A519 330 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 MAGEB16A2A368 324 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 FUOMA2VDF0 154 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 GOLGA8OA6NCC3 632 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CFAP73A6NFT4 308 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ZSCAN5CA6NGD5 496 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SMIM23A6NLE4 172 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CCT8L1PA6NM43 557 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 A8MUI8 341 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 GOLGA8NF8WBI6 632 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 H0YAE9 185 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 GOLGA8SH3BPF8 625 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 H3BQV1 296 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 TRIM77I1YAP6 450 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SGK1O00141 431 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 PSMD11O00231 422 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CACNB4O00305 520 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CCRL2O00421 344 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CLDN4O14493 209 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 RRP8O43159 456 aaKnown RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SLC7A4O43246 635 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 RIPK2O43353 540 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 STX10O60499 249 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 NIPSNAP2O75323 286 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 NDUFS6O75380 124 aaKnown RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CRLF1O75462 422 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CLN5O75503 358 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 PLEKHA8P1O95397 391 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SEC24AO95486 1093 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ECDO95905 644 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 FAM107AO95990 144 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 GAS8O95995 478 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 IGHEP01854 428 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 KRT6AP02538 564 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 MT-ND3P03897 115 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 KRT6BP04259 564 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms