RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 REM1O75628 298 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 TNFSF13O75888 250 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 OR4F21O95013 312 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 INHBAP08476 426 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 COL6A2P12110 1019 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 CLDN18P56856 261 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 TCHHL1Q5QJ38 904 aaPredicted RBP11.24□□□□□ -0.61
CPSF3-204ENST00000489403 AAGABQ6PD74 315 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 NPSR1Q6W5P4 371 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 BIVMQ86UB2 503 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 RELL1Q8IUW5 271 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 CCDC116Q8IYX3 515 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 C17orf53Q8N3J3 647 aaPredicted RBP11.24□□□□□ -0.61
CPSF3-204ENST00000489403 TMEM151AQ8N4L1 468 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 ZNF675Q8TD23 568 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 RNF138Q8WVD3 245 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 SMPDL3BQ92485 455 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 BTBD9Q96Q07 612 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 ADOQ96SZ5 270 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 PAFAH2Q99487 392 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 C1QTNF3Q9BXJ4 246 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 MRPL46Q9H2W6 279 aaKnown RBP11.24□□□□□ -0.61
CPSF3-204ENST00000489403 ACBD3Q9H3P7 528 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 PIGMQ9H3S5 423 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 PFDN4Q9NQP4 134 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 ZNF780BQ9Y6R6 833 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 DNHD1Q96M86 4753 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 A0A1W2PNV4 684 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 C17orf51A8MQB3 221 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 BCAS2O75934 225 aaPredicted RBP11.23□□□□□ -0.61
CPSF3-204ENST00000489403 TGM6O95932 706 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 IL3P08700 152 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 CTAGE8P0CG41 777 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 CT45A8P0DMV1 189 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 CT45A9P0DMV2 189 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 CHN1P15882 459 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 ZNF708P17019 499 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 TCEA1P23193 301 aaKnown RBP11.23□□□□□ -0.61
CPSF3-204ENST00000489403 CHMP24386 653 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 SERPINB9P50453 376 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 DIO3P55073 304 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 CORO7P57737 925 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 ETF1P62495 437 aaKnown RBP11.23□□□□□ -0.61
CPSF3-204ENST00000489403 GAB1Q13480 694 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 CT45A2Q5DJT8 189 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 OR5M10Q6IEU7 315 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 SCIMPQ6UWF3 145 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 TAOK1Q7L7X3 1001 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 CXorf67Q86X51 503 aaPredicted RBP11.23□□□□□ -0.61
CPSF3-204ENST00000489403 GRAMD2AQ8IUY3 354 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 CTAGE4Q8IX94 777 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 OR9A2Q8NGT5 310 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 KAT2AQ92830 837 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 C18orf12Q96KH6 178 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 VSTM2LQ96N03 204 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 SFXN2Q96NB2 322 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 MRPL57Q9BQC6 102 aaKnown RBP11.23□□□□□ -0.61
CPSF3-204ENST00000489403 NEUROD4Q9HD90 331 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 BEX4Q9NWD9 120 aaPredicted RBP11.23□□□□□ -0.61
CPSF3-204ENST00000489403 NMRK1Q9NWW6 199 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 VPS29Q9UBQ0 182 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 MCM8Q9UJA3 840 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 DKKL1Q9UK85 242 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 PACSIN3Q9UKS6 424 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 TESMINQ9Y4I5 508 aa11.23□□□□□ -0.61
CPSF3-204ENST00000489403 MAP1AP78559 2803 aaPredicted RBP11.23□□□□□ -0.61
CPSF3-204ENST00000489403 TRIM49D1C9J1S8 452 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 HAX1O00165 279 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 PCDH7O60245 1069 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 ZIC3O60481 467 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 ESRRBO95718 433 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 HSD3B1P14060 373 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 GRK2P25098 689 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 HSD3B2P26439 372 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 IL12BP29460 328 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 CPOXP36551 454 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 HSD17B3P37058 310 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 GAS1P54826 345 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 RAE1P78406 368 aaKnown RBP11.22□□□□□ -0.61
CPSF3-204ENST00000489403 CLCQ05315 142 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 LTBQ06643 244 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 CSTF3Q12996 717 aaKnown RBP11.22□□□□□ -0.61
CPSF3-204ENST00000489403 EFR3AQ14156 821 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 NIPBLQ6KC79 2804 aaeCLIP11.22□□□□□ -0.61
CPSF3-204ENST00000489403 VWA1Q6PCB0 445 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 Q71RC1 249 aaPredicted RBP11.22□□□□□ -0.61
CPSF3-204ENST00000489403 LARP4Q71RC2 724 aaKnown RBP eCLIP11.22□□□□□ -0.612e-6■■■■□ 23.7
CPSF3-204ENST00000489403 CDYL2Q8N8U2 506 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 DCAKDQ8WVC6 231 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 EXOSC8Q96B26 276 aaKnown RBP11.22□□□□□ -0.61
CPSF3-204ENST00000489403 ERP27Q96DN0 273 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 ACPTQ9BZG2 426 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 FOLH1BQ9HBA9 442 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 DLGAP4Q9Y2H0 992 aa11.22□□□□□ -0.61
CPSF3-204ENST00000489403 MRPS18CQ9Y3D5 142 aaKnown RBP11.22□□□□□ -0.61
CPSF3-204ENST00000489403 FLNAP21333 2647 aaKnown RBP11.22□□□□□ -0.61
CPSF3-204ENST00000489403 POC1B-GALNT4F8VUJ3 575 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 MANBAO00462 879 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 MSTNO14793 375 aa11.21□□□□□ -0.61
CPSF3-204ENST00000489403 CASKO14936 926 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms