RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 LRIG1Q96JA1 1093 aa16.72■□□□□ 0.27
NPHP4-209ENST00000489180 KATNBL1Q9H079 304 aa16.72■□□□□ 0.27
NPHP4-209ENST00000489180 CEPT1Q9Y6K0 416 aa16.72■□□□□ 0.27
NPHP4-209ENST00000489180 GOLGA4Q13439 2230 aaKnown RBP16.72■□□□□ 0.27
NPHP4-209ENST00000489180 GCAP28676 217 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 POU3F4P49335 361 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 ELOCQ15369 112 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 PROX2Q3B8N5 592 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 CNIH2Q6PI25 160 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 ADGRG5Q8IZF4 528 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 SLC7A5P1Q8MH63 180 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 RAD9AQ99638 391 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 PFKMP08237 780 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 CHMP24386 653 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 HRH2P25021 359 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 DHCR24Q15392 516 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 TMEM25Q86YD3 366 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 SPARTQ8N0X7 666 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 FAM46BQ96A09 425 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 GMLQ99445 158 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 TREX2Q9BQ50 279 aaPredicted RBP16.71■□□□□ 0.27
NPHP4-209ENST00000489180 NPIPB15A6NHN6 443 aaPredicted RBP16.71■□□□□ 0.27
NPHP4-209ENST00000489180 RETP07949 1114 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 TMEM35AQ53FP2 167 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 METTL25Q8N6Q8 603 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 OR5AR1Q8NGP9 310 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 ZDHHC12Q96GR4 267 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 URM1Q9BTM9 101 aaKnown RBP16.71■□□□□ 0.27
NPHP4-209ENST00000489180 SAV1Q9H4B6 383 aaPredicted RBP16.71■□□□□ 0.27
NPHP4-209ENST00000489180 EDARQ9UNE0 448 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 CSNK1G3Q9Y6M4 447 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 MANEALQ5VSG8 457 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 KIAA0319Q5VV43 1072 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 AGPAT4Q9NRZ5 378 aa16.71■□□□□ 0.27
NPHP4-209ENST00000489180 FAM221BA6H8Z2 402 aa16.71■□□□□ 0.26
NPHP4-209ENST00000489180 LRRTM2O43300 516 aa16.71■□□□□ 0.26
NPHP4-209ENST00000489180 MAGEA3P43357 314 aa16.71■□□□□ 0.26
NPHP4-209ENST00000489180 ZNF84P51523 738 aa16.71■□□□□ 0.26
NPHP4-209ENST00000489180 FGFBP1Q14512 234 aa16.71■□□□□ 0.26
NPHP4-209ENST00000489180 CPOQ8IVL8 374 aa16.71■□□□□ 0.26
NPHP4-209ENST00000489180 B3GNT7Q8NFL0 401 aa16.71■□□□□ 0.26
NPHP4-209ENST00000489180 OR5D16Q8NGK9 328 aa16.71■□□□□ 0.26
NPHP4-209ENST00000489180 TFAP2CQ92754 450 aa16.71■□□□□ 0.26
NPHP4-209ENST00000489180 HYLS1Q96M11 299 aa16.71■□□□□ 0.26
NPHP4-209ENST00000489180 NECAB3Q96P71 396 aaPredicted RBP16.71■□□□□ 0.26
NPHP4-209ENST00000489180 MYNNQ9NPC7 610 aa16.71■□□□□ 0.26
NPHP4-209ENST00000489180 IL26Q9NPH9 171 aa16.71■□□□□ 0.26
NPHP4-209ENST00000489180 COPZ2Q9P299 210 aa16.71■□□□□ 0.26
NPHP4-209ENST00000489180 KLHL33A6NCF5 533 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 GPR37L1O60883 481 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 FBXO45P0C2W1 286 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 RNH1P13489 461 aaKnown RBP16.7■□□□□ 0.26
NPHP4-209ENST00000489180 PRKXP51817 358 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 HSD11B2P80365 405 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 S100A12P80511 92 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 DEFB110Q30KQ9 67 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 TLDC1Q6P9B6 456 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 VWA5B2Q8N398 1253 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 ARL14Q8N4G2 192 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 OR5AK2Q8NH90 309 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 GPR34Q9UPC5 381 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 SLC7A11Q9UPY5 501 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 TRAV18A0A075B6X5 111 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 SMCO3A2RU48 225 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 FGF4P08620 206 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 CERS1P27544 350 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 NKPD1Q17RQ9 610 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 ATAD3CQ5T2N8 411 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 PDZD9Q8IXQ8 264 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 CHCHD4Q8N4Q1 142 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 ACVR1CQ8NER5 493 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 ALG8Q9BVK2 526 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 RETREG1Q9H6L5 497 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 ACOT13Q9NPJ3 140 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 CICQ96RK0 1608 aaPredicted RBP16.7■□□□□ 0.26
NPHP4-209ENST00000489180 VIPR2P41587 438 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 ELAVL3Q14576 367 aaKnown RBP16.7■□□□□ 0.26
NPHP4-209ENST00000489180 KDELC1Q6UW63 502 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 SCD5Q86SK9 330 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 DCP2Q8IU60 420 aaKnown RBP16.7■□□□□ 0.26
NPHP4-209ENST00000489180 PITX2Q99697 317 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 PDLIM7Q9NR12 457 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 DCAF13Q9NV06 445 aaKnown RBP16.7■□□□□ 0.26
NPHP4-209ENST00000489180 KLHL9Q9P2J3 617 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 IGKV6D-21A0A0A0MT36 114 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 JRKO75564 520 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 ERCC1P07992 297 aaPredicted RBP16.7■□□□□ 0.26
NPHP4-209ENST00000489180 PGCP20142 388 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 WNT4P56705 351 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 ELP2Q6IA86 826 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 ZMYND19Q96E35 227 aaPredicted RBP16.7■□□□□ 0.26
NPHP4-209ENST00000489180 ACTRT3Q9BYD9 372 aa16.7■□□□□ 0.26
NPHP4-209ENST00000489180 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.7■□□□□ 0.265e-7■■■■■ 29.4
NPHP4-209ENST00000489180 ZNF142P52746 1687 aaPredicted RBP16.69■□□□□ 0.26
NPHP4-209ENST00000489180 HEPACAM2A8MVW5 462 aa16.69■□□□□ 0.26
NPHP4-209ENST00000489180 ZC3H14Q6PJT7 736 aaKnown RBP16.69■□□□□ 0.26
NPHP4-209ENST00000489180 OR9A2Q8NGT5 310 aa16.69■□□□□ 0.26
NPHP4-209ENST00000489180 DHRS4Q9BTZ2 278 aa16.69■□□□□ 0.26
NPHP4-209ENST00000489180 GPR174Q9BXC1 333 aa16.69■□□□□ 0.26
NPHP4-209ENST00000489180 AK6Q9Y3D8 172 aaKnown RBP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms