RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 PNO1Q9NRX1 252 aaKnown RBP8.1□□□□□ -1.11
USP4-213ENST00000488520 MRGBPQ9NV56 204 aa8.1□□□□□ -1.11
USP4-213ENST00000488520 ATAD3AQ9NVI7 634 aa8.1□□□□□ -1.11
USP4-213ENST00000488520 FGFR1OP2Q9NVK5 253 aa8.1□□□□□ -1.11
USP4-213ENST00000488520 KCMF1Q9P0J7 381 aa8.1□□□□□ -1.11
USP4-213ENST00000488520 SH3BP4Q9P0V3 963 aa8.1□□□□□ -1.11
USP4-213ENST00000488520 BAIAP2L1Q9UHR4 511 aa8.1□□□□□ -1.11
USP4-213ENST00000488520 TEKT2Q9UIF3 430 aa8.1□□□□□ -1.11
USP4-213ENST00000488520 ATG4BQ9Y4P1 393 aa8.1□□□□□ -1.11
USP4-213ENST00000488520 CLCA3PQ9Y6N3 262 aa8.1□□□□□ -1.11
USP4-213ENST00000488520 RTTNQ86VV8 2226 aa8.1□□□□□ -1.11
USP4-213ENST00000488520 HRNRQ86YZ3 2850 aaPredicted RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 A0A1W2PQ72 361 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 A0A1W2PR48 441 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 GLOD5A6NK44 160 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 C4orf51C9J302 202 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 CYR61O00622 381 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 SDHDO14521 159 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 PGRMC2O15173 223 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 AKAP10O43572 662 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 ASNA1O43681 348 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 TMPRSS11DO60235 418 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 F13BP05160 661 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 IL3P08700 152 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 BCKDHAP12694 445 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 IDO1P14902 403 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 PORP16435 677 aaPredicted RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 CSNK2A2P19784 350 aaPredicted RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 PRPS1L1P21108 318 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 GSTT1P30711 240 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 LSP1P33241 339 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 HPCAL1P37235 193 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 CD96P40200 585 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 XKP51811 444 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 HNRNPH2P55795 449 aaKnown RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 AP2B1P63010 937 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 RAE1P78406 368 aaKnown RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 BTG2P78543 158 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 OC90Q02509 493 aaPredicted RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 TUBA3CQ13748 450 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 KIAA0040Q15053 153 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 OR1C1Q15619 314 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 PGS1Q32NB8 556 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 LSM12Q3MHD2 195 aaKnown RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 KRTCAP3Q53RY4 240 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 XKR7Q5GH72 579 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 ACER2Q5QJU3 275 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 CPTPQ5TA50 214 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 C18orf63Q68DL7 685 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 SPINK14Q6IE38 97 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 MRM1Q6IN84 353 aaKnown RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 TUBA3EQ6PEY2 450 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 Q6ZPB1 254 aaPredicted RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 QSOX2Q6ZRP7 698 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 IKBIPQ70UQ0 350 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 LARP4Q71RC2 724 aaKnown RBP eCLIP8.09□□□□□ -1.11
USP4-213ENST00000488520 GALNTL5Q7Z4T8 443 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 CPEB2Q7Z5Q1 589 aaKnown RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 CLNKQ7Z7G1 428 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 DOLPP1Q86YN1 238 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 ZC3H7AQ8IWR0 971 aaKnown RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 OR4N5Q8IXE1 308 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 THAP3Q8WTV1 239 aaPredicted RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 GFM2Q969S9 779 aaKnown RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 MTERF3Q96E29 417 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 ZNF354BQ96LW1 612 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 NPAS2Q99743 824 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 ELAC2Q9BQ52 826 aaKnown RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 UTP23Q9BRU9 249 aaKnown RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 PELOQ9BRX2 385 aaKnown RBP8.09□□□□□ -1.11
USP4-213ENST00000488520 VN1R1Q9GZP7 353 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 ENKD1Q9H0I2 346 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 RABEP2Q9H5N1 569 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 REEP4Q9H6H4 257 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 MYNNQ9NPC7 610 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 ADAM21Q9UKJ8 722 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 UTS2RQ9UKP6 389 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 PCDHGB4Q9UN71 923 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 CCL27Q9Y4X3 112 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 PCDHGB6Q9Y5F9 930 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 PCDHA9Q9Y5H5 950 aa8.09□□□□□ -1.11
USP4-213ENST00000488520 FLNAP21333 2647 aaKnown RBP8.08□□□□□ -1.12
USP4-213ENST00000488520 A8MUA0 341 aa8.08□□□□□ -1.12
USP4-213ENST00000488520 TMPRSS2O15393 492 aa8.08□□□□□ -1.12
USP4-213ENST00000488520 LDB3O75112 727 aa8.08□□□□□ -1.12
USP4-213ENST00000488520 SLC22A3O75751 556 aa8.08□□□□□ -1.12
USP4-213ENST00000488520 LRATO95237 230 aa8.08□□□□□ -1.12
USP4-213ENST00000488520 AIFM1O95831 613 aa8.08□□□□□ -1.12
USP4-213ENST00000488520 G6PDP11413 515 aa8.08□□□□□ -1.12
USP4-213ENST00000488520 CD1EP15812 388 aa8.08□□□□□ -1.12
USP4-213ENST00000488520 DDCP20711 480 aa8.08□□□□□ -1.12
USP4-213ENST00000488520 MAOAP21397 527 aa8.08□□□□□ -1.12
USP4-213ENST00000488520 NTSP30990 170 aa8.08□□□□□ -1.12
USP4-213ENST00000488520 CLNS1AP54105 237 aaKnown RBP8.08□□□□□ -1.12
USP4-213ENST00000488520 MANFP55145 182 aaKnown RBP8.08□□□□□ -1.12
USP4-213ENST00000488520 CLDN8P56748 225 aa8.08□□□□□ -1.12
USP4-213ENST00000488520 FOLH1Q04609 750 aa8.08□□□□□ -1.12
USP4-213ENST00000488520 SF3A3Q12874 501 aaKnown RBP eCLIP8.08□□□□□ -1.12
USP4-213ENST00000488520 MAPKAPK3Q16644 382 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms