RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 NPSR1Q6W5P4 371 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 ZNF704Q6ZNC4 412 aaPredicted RBP13.82□□□□□ -0.2
MCF2L-228ENST00000487354 SH2D5Q6ZV89 423 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 P4HA3Q7Z4N8 544 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 GOLGA7Q7Z5G4 137 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 KLHL7Q8IXQ5 586 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 OR52R1Q8NGF1 315 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 NXNL1Q96CM4 212 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 ZNF845Q96IR2 970 aaPredicted RBP13.82□□□□□ -0.2
MCF2L-228ENST00000487354 ZNF681Q96N22 645 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 CDK15Q96Q40 435 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 MRPL1Q9BYD6 325 aaKnown RBP13.82□□□□□ -0.2
MCF2L-228ENST00000487354 TRIM31Q9BZY9 425 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 BRINP2Q9C0B6 783 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 ANKRA2Q9H9E1 313 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 NMRAL1Q9HBL8 299 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 BCAP29Q9UHQ4 241 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 GPR55Q9Y2T6 319 aaPredicted RBP13.82□□□□□ -0.2
MCF2L-228ENST00000487354 PCDHA9Q9Y5H5 950 aa13.82□□□□□ -0.2
MCF2L-228ENST00000487354 EFCAB8A8MWE9 144 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 RNF223E7ERA6 249 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 OR7A17O14581 309 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 SIX3O95343 332 aaPredicted RBP13.81□□□□□ -0.2
MCF2L-228ENST00000487354 KLK1P06870 262 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 LTA4HP09960 611 aaKnown RBP13.81□□□□□ -0.2
MCF2L-228ENST00000487354 CT45A8P0DMV1 189 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 CT45A9P0DMV2 189 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 PCSK2P16519 638 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 GRK2P25098 689 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 DPP4P27487 766 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 FEN1P39748 380 aaKnown RBP13.81□□□□□ -0.2
MCF2L-228ENST00000487354 PPICP45877 212 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 ATP5J2P56134 94 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 CORO7P57737 925 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 PHEXP78562 749 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 MRPS35P82673 323 aaKnown RBP13.81□□□□□ -0.2
MCF2L-228ENST00000487354 GTF2H2Q13888 395 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 CT45A2Q5DJT8 189 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 GTF2H2CQ6P1K8 395 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 UBQLNLQ8IYU4 475 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 FADS6Q8N9I5 356 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 OR52B6Q8NGF0 335 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 FNDC9Q8TBE3 224 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 TMEM171Q8WVE6 324 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 REPS1Q96D71 796 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 CNRIP1Q96F85 164 aaPredicted RBP13.81□□□□□ -0.2
MCF2L-228ENST00000487354 COL21A1Q96P44 957 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 BTBD9Q96Q07 612 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 LRRC1Q9BTT6 524 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 DKKL1Q9UK85 242 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 ADAM29Q9UKF5 820 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 CFL2Q9Y281 166 aa13.81□□□□□ -0.2
MCF2L-228ENST00000487354 THBS1P07996 1170 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 GALNT1Q10472 559 aaPredicted RBP13.8□□□□□ -0.2
MCF2L-228ENST00000487354 PFKFB4Q16877 469 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 ZNF628Q5EBL2 1059 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 BEX5Q5H9J7 111 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 C6orf163Q5TEZ5 329 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 CYS1Q717R9 158 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 METTL4Q8N3J2 472 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 ZNF611Q8N823 705 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 RHEBL1Q8TAI7 183 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 KCTD4Q8WVF5 259 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 ADOQ96SZ5 270 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 SERPINI1Q99574 410 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 SLC39A3Q9BRY0 314 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 RTN4RQ9BZR6 473 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 IPPKQ9H8X2 491 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 ACOT9Q9Y305 439 aa13.8□□□□□ -0.2
MCF2L-228ENST00000487354 FREM1Q5H8C1 2179 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 SVEP1Q4LDE5 3571 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 OVOL3O00110 214 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 HS3ST1O14792 307 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 TMCC2O75069 709 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 TNFRSF21O75509 655 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 AQP8O94778 261 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 PEPDP12955 493 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 TBXA2RP21731 343 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 ALDH18A1P54886 795 aaKnown RBP13.79□□□□□ -0.2
MCF2L-228ENST00000487354 CLDN20P56880 219 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 TRAF3Q13114 568 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 SLMAPQ14BN4 828 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 STAC2Q6ZMT1 411 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 DNM1P46Q6ZS02 220 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 OR2M3Q8NG83 312 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 LILRB1Q8NHL6 650 aaPredicted RBP13.79□□□□□ -0.2
MCF2L-228ENST00000487354 PYROXD1Q8WU10 500 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 CDKL2Q92772 493 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 TM4SF18Q96CE8 201 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 TMCO6Q96DC7 493 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 VSTM2LQ96N03 204 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 GPR78Q96P69 363 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 PINK1Q9BXM7 581 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 KLHL4Q9C0H6 718 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 CXorf56Q9H5V9 222 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 SNX24Q9Y343 169 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 ZNF337Q9Y3M9 751 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 ZNF175Q9Y473 711 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 ANGPTL3Q9Y5C1 460 aa13.79□□□□□ -0.2
MCF2L-228ENST00000487354 CADP27708 2225 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms