RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 MIER3Q7Z3K6 550 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 C5orf24Q7Z6I8 188 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 FAM131BQ86XD5 332 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 DZIP1Q86YF9 867 aaKnown RBP4.83□□□□□ -1.64
USP40-213ENST00000483216 SYCP3Q8IZU3 236 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 CCDC185Q8N715 623 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 AMER3Q8N944 861 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 DQX1Q8TE96 717 aaKnown RBP4.83□□□□□ -1.64
USP40-213ENST00000483216 NPRL2Q8WTW4 380 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 RIT1Q92963 219 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 CMTM5Q96DZ9 223 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 BIRC8Q96P09 236 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 TSSK2Q96PF2 358 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 SERPINI1Q99574 410 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 SOSTQ9BQB4 213 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 MRPS26Q9BYN8 205 aaKnown RBP4.83□□□□□ -1.64
USP40-213ENST00000483216 FRMD8P1Q9BZ68 369 aaPredicted RBP4.83□□□□□ -1.64
USP40-213ENST00000483216 TRIM9Q9C026 710 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 RPF1Q9H9Y2 349 aaKnown RBP4.83□□□□□ -1.64
USP40-213ENST00000483216 PLGRKTQ9HBL7 147 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 C6orf50Q9HD87 102 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 NLGN3Q9NZ94 848 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 UVRAGQ9P2Y5 699 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 EPS15L1Q9UBC2 864 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 TRIM10Q9UDY6 481 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 SUN2Q9UH99 717 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 RSL24D1Q9UHA3 163 aaKnown RBP4.83□□□□□ -1.64
USP40-213ENST00000483216 FAM153AQ9UHL3 310 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 TRMT112Q9UI30 125 aaKnown RBP4.83□□□□□ -1.64
USP40-213ENST00000483216 ZNF510Q9Y2H8 683 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 AP4S1Q9Y587 144 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 ZHX2Q9Y6X8 837 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 LAMB2P55268 1798 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 THSD7AQ9UPZ6 1657 aa4.83□□□□□ -1.64
USP40-213ENST00000483216 BRWD3Q6RI45 1802 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 A0A1B0GVY2 172 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 TMEM120BA0PK00 339 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 GLTPD2A6NH11 291 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 E5RGE8 158 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 H0YJX3 145 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 GOLGA8TH3BQL2 631 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 I3L4J1 428 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 CASQ2O14958 399 aaPredicted RBP4.82□□□□□ -1.64
USP40-213ENST00000483216 SPAG6O75602 509 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 PSMG1O95456 288 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 TTC4O95801 387 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 HPRP00739 348 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 FGGP02679 453 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 LYNP07948 512 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 GOLGA8HP0CJ92 632 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 KRT3P12035 628 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 KRT13P13646 458 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 CAPGP40121 348 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 SLC1A1P43005 524 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 TMED10P49755 219 aaKnown RBP4.82□□□□□ -1.64
USP40-213ENST00000483216 NDST2P52849 883 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 PLTPP55058 493 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 HAND2P61296 217 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 KCNJ2P63252 427 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 GFPT1Q06210 699 aaPredicted RBP4.82□□□□□ -1.64
USP40-213ENST00000483216 SNX1Q13596 522 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 GRB14Q14449 540 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 UAP1Q16222 522 aaPredicted RBP4.82□□□□□ -1.64
USP40-213ENST00000483216 EXOC3L4Q17RC7 722 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 KLHL38Q2WGJ6 581 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 CNPY1Q3B7I2 92 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 ANKRD20A4Q4UJ75 823 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 PARP10Q53GL7 1025 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 ZNF542PQ5EBM4 170 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 FAM46CQ5VWP2 391 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 LINC00299Q6ZSB3 139 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 C3orf62Q6ZUJ4 267 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 ERI1Q8IV48 349 aaKnown RBP4.82□□□□□ -1.64
USP40-213ENST00000483216 PHC2Q8IXK0 858 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 C4orf19Q8IY42 314 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 BLIDQ8IZY5 108 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 RPLP0P6Q8NHW5 317 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 CHPT1Q8WUD6 406 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 NAT14Q8WUY8 206 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 ATP6V0A1Q93050 837 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 ART4Q93070 314 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 SNF8Q96H20 258 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 FOXN4Q96NZ1 517 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 INTS14Q96SY0 518 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 DCTN5Q9BTE1 182 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 TBC1D10AQ9BXI6 508 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 WWP1Q9H0M0 922 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 TUBB1Q9H4B7 451 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 AZI2Q9H6S1 392 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 DIABLOQ9NR28 239 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 NMRK1Q9NWW6 199 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 UBAP1Q9NZ09 502 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 C6orf203Q9P0P8 240 aaPredicted RBP4.82□□□□□ -1.64
USP40-213ENST00000483216 SPATA7Q9P0W8 599 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 VPS54Q9P1Q0 977 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 ARMCX3Q9UH62 379 aaPredicted RBP4.82□□□□□ -1.64
USP40-213ENST00000483216 DNAJC12Q9UKB3 198 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 RAB26Q9ULW5 256 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 TRAF3IP3Q9Y228 551 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 NSG2Q9Y328 171 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms