RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 DNAJB5O75953 348 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 SOX30O94993 753 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 NKX2-2O95096 273 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 CT45A8P0DMV1 189 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 CT45A9P0DMV2 189 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 GPX2P18283 190 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 CPOXP36551 454 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 SLC7A2P52569 658 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 SOX8P57073 446 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 MLF1P58340 268 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 CXADRP78310 365 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 PSG6Q00889 435 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 FADDQ13158 208 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 CT45A2Q5DJT8 189 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 PIGGQ5H8A4 983 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 ATAD3BQ5T9A4 648 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 B3GNTL1Q67FW5 361 aaPredicted RBP11.32□□□□□ -0.6
SDC1-206ENST00000482879 NPSR1Q6W5P4 371 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 APLFQ8IW19 511 aaPredicted RBP11.32□□□□□ -0.6
SDC1-206ENST00000482879 SLC15A3Q8IY34 581 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 DEFB107AQ8IZN7 70 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 PGAM4Q8N0Y7 254 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 TAGAPQ8N103 731 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 LGI4Q8N135 537 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 COX18Q8N8Q8 333 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 C17orf47Q8NEP4 570 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 OR10A6Q8NH74 314 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 APOBEC4Q8WW27 367 aaKnown RBP11.32□□□□□ -0.6
SDC1-206ENST00000482879 PIK3R3Q92569 461 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 CDS1Q92903 461 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 TMEM125Q96AQ2 219 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 HSPBAP1Q96EW2 488 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 ZNF354BQ96LW1 612 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 STACQ99469 402 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 ECSITQ9BQ95 431 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 C1orf21Q9H246 121 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 Q9N2J8 555 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 DUSP22Q9NRW4 184 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 CMTM6Q9NX76 183 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 GIN1Q9NXP7 522 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 TAS2R1Q9NYW7 299 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 AP3M1Q9Y2T2 418 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 PCDHGB3Q9Y5G1 929 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 KCNE3Q9Y6H6 103 aa11.32□□□□□ -0.6
SDC1-206ENST00000482879 MAP1BP46821 2468 aaKnown RBP11.32□□□□□ -0.6
SDC1-206ENST00000482879 HMGN4O00479 90 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 TO15178 435 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 ACOX3O15254 700 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 ASNA1O43681 348 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 MAN1A2O60476 641 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 ITGA10O75578 1167 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 OR2J2O76002 312 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 AGR2O95994 175 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 TRHRP34981 398 aaPredicted RBP11.31□□□□□ -0.6
SDC1-206ENST00000482879 RASSF2P50749 326 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 DSTNP60981 165 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 POU6F2P78424 691 aaPredicted RBP11.31□□□□□ -0.6
SDC1-206ENST00000482879 RAPSNQ13702 412 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 MEP1AQ16819 746 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 CYP27C1Q4G0S4 372 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 GCNT6Q5T4J0 391 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 GPR155Q7Z3F1 870 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 PRR22Q8IZ63 422 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 C10orf111Q8N326 155 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 OR4N2Q8NGD1 307 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 SLC22A8Q8TCC7 542 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 SLC7A6OSQ96CW6 309 aaPredicted RBP11.31□□□□□ -0.6
SDC1-206ENST00000482879 RMND5BQ96G75 393 aaPredicted RBP11.31□□□□□ -0.6
SDC1-206ENST00000482879 CDRT15Q96T59 188 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 BTBD2Q9BX70 525 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 PIF1Q9H611 641 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 KAT8Q9H7Z6 458 aaKnown RBP11.31□□□□□ -0.6
SDC1-206ENST00000482879 SPAG4Q9NPE6 437 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 EXD2Q9NVH0 621 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 THUMPD1Q9NXG2 353 aaKnown RBP11.31□□□□□ -0.6
SDC1-206ENST00000482879 GPR83Q9NYM4 423 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 ADA2Q9NZK5 511 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 TEKT2Q9UIF3 430 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 ZMIZ1Q9ULJ6 1067 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 CBLCQ9ULV8 474 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 YARS2Q9Y2Z4 477 aaKnown RBP11.31□□□□□ -0.6
SDC1-206ENST00000482879 CACNA1GO43497 2377 aa11.31□□□□□ -0.6
SDC1-206ENST00000482879 TNRC6AQ8NDV7 1962 aaKnown RBP11.3□□□□□ -0.6
SDC1-206ENST00000482879 A8MVJ9 347 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 NME4O00746 187 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 GYG2O15488 501 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 TNFRSF21O75509 655 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 REM1O75628 298 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 NADKO95544 446 aaPredicted RBP11.3□□□□□ -0.6
SDC1-206ENST00000482879 NUDT7P0C024 238 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 BMP2P12643 396 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 RFX3P48380 749 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 NRG3P56975 720 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 MRPS22P82650 360 aaKnown RBP11.3□□□□□ -0.6
SDC1-206ENST00000482879 LIPEQ05469 1076 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 DECR1Q16698 335 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 CYP51A1Q16850 503 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 CRB2Q5IJ48 1285 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 ACER2Q5QJU3 275 aa11.3□□□□□ -0.6
SDC1-206ENST00000482879 ABHD17BQ5VST6 288 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms