RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 ZNF675Q8TD23 568 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 APOBEC4Q8WW27 367 aaKnown RBP13.55□□□□□ -0.24
CHD3-211ENST00000481999 GTPBP3Q969Y2 492 aaKnown RBP13.55□□□□□ -0.24
CHD3-211ENST00000481999 DACH2Q96NX9 599 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 ZBTB20Q9HC78 741 aaPredicted RBP13.55□□□□□ -0.24
CHD3-211ENST00000481999 UCKL1Q9NWZ5 548 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 GPR83Q9NYM4 423 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 EHD3Q9NZN3 535 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 A3GALT2U3KPV4 340 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 RP1P56715 2156 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 SGK494L7N484 410 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 TNFSF14O43557 240 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 CCNB2O95067 398 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 EPPINO95925 133 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 RPLP0P05388 317 aaKnown RBP13.55□□□□□ -0.24
CHD3-211ENST00000481999 NR2F1P10589 423 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 GADD45AP24522 165 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 NUDT6P53370 316 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 PUS10Q3MIT2 529 aaKnown RBP13.55□□□□□ -0.24
CHD3-211ENST00000481999 TUBA3EQ6PEY2 450 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 AMER2Q8N7J2 671 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 A4GALTQ9NPC4 353 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 KLHL3Q9UH77 587 aa13.55□□□□□ -0.24
CHD3-211ENST00000481999 PAIP2BQ9ULR5 123 aaKnown RBP13.55□□□□□ -0.24
CHD3-211ENST00000481999 WBP11Q9Y2W2 641 aaKnown RBP13.55□□□□□ -0.24
CHD3-211ENST00000481999 TRBV4-1A0A0J9YWV2 114 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 ARRDC5A6NEK1 342 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 OR5K3A6NET4 321 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 METTL15A6NJ78 407 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 CDC123O75794 336 aaPredicted RBP13.54□□□□□ -0.24
CHD3-211ENST00000481999 GADD45GO95257 159 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 IFNW1P05000 195 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 STSP08842 583 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 RHCEP18577 417 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 CD38P28907 300 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 CDC42P60953 191 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 RPS3AP61247 264 aaKnown RBP13.54□□□□□ -0.24
CHD3-211ENST00000481999 SHC2P98077 582 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 TRMT12Q53H54 448 aaKnown RBP13.54□□□□□ -0.24
CHD3-211ENST00000481999 NKAIN2Q5VXU1 208 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 MEX3DQ86XN8 651 aaKnown RBP13.54□□□□□ -0.24
CHD3-211ENST00000481999 KBTBD8Q8NFY9 601 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 ELP4Q96EB1 424 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 CRELD1Q96HD1 420 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 TWSG1Q9GZX9 223 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 DAPP1Q9UN19 280 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 EML5Q05BV3 1969 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 SLC9B1P1A6NJY1 282 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 METTL12A8MUP2 240 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 TAF4O00268 1085 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 MPZL2O60487 215 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 ZIC2O95409 532 aaPredicted RBP13.54□□□□□ -0.24
CHD3-211ENST00000481999 ADORA3P0DMS8 318 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 SMIM10L1P0DMW3 83 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 CSNK2A2P19784 350 aaPredicted RBP13.54□□□□□ -0.24
CHD3-211ENST00000481999 PTNP21246 168 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 CBLP22681 906 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 XKP51811 444 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 GFERP55789 205 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 ST3GAL4Q11206 333 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 PIN1Q13526 163 aaPredicted RBP13.54□□□□□ -0.24
CHD3-211ENST00000481999 METTL27Q8N6F8 245 aaPredicted RBP13.54□□□□□ -0.24
CHD3-211ENST00000481999 SLC16A11Q8NCK7 471 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 SRFBP1Q8NEF9 429 aaKnown RBP13.54□□□□□ -0.24
CHD3-211ENST00000481999 C9orf43Q8TAL5 461 aaPredicted RBP13.54□□□□□ -0.24
CHD3-211ENST00000481999 SMIM10Q96HG1 83 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 MAP3K3Q99759 626 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 SEC14L3Q9UDX4 400 aa13.54□□□□□ -0.24
CHD3-211ENST00000481999 KIR2DS5A0A0G2JLQ3 304 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 A0A0G2JNG1 304 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 A0A1W2PR77 199 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 SH3D21A4FU49 640 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 SAGE2PA6NJ88 616 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 KIR2DS3K7RE56 304 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 FCMRO60667 390 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 ZNF217O75362 1048 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 ALOX12P18054 663 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 HOXC5Q00444 222 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 TNFRSF17Q02223 184 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 IRF3Q14653 427 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 KIR2DS5Q14953 304 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 SEC23BQ15437 767 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 GPAT3Q53EU6 434 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 AGAP7PQ5VUJ5 663 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 TCTN3Q6NUS6 607 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 ARL14Q8N4G2 192 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 NUP43Q8NFH3 380 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 NT5CQ8TCD5 201 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 RERGQ96A58 199 aaPredicted RBP13.53□□□□□ -0.24
CHD3-211ENST00000481999 CEP192Q8TEP8 1941 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 A0A0J9YY10 115 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 ISPDA4D126 451 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 EFCAB10A6NFE3 127 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 FGF17O60258 216 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 CNOT3O75175 753 aaKnown RBP13.53□□□□□ -0.24
CHD3-211ENST00000481999 ATP6V1G1O75348 118 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 RDH16O75452 317 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 IGFBP1P08833 259 aaPredicted RBP13.53□□□□□ -0.24
CHD3-211ENST00000481999 MPIP34949 423 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 DNASE1L3Q13609 305 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms