RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ZNF85Q03923 595 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 BNIP1Q12981 228 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 CALCOCO2Q13137 446 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 ZNF146Q15072 292 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 CYBRD1Q53TN4 286 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 RABGAP1LQ5R372 815 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 BEND6Q5SZJ8 279 aaPredicted RBP4.26□□□□□ -1.73
UPF3B-203ENST00000478840 ARHGAP11AQ6P4F7 1023 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 HACD2Q6Y1H2 254 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 STOX1Q6ZVD7 989 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 NR2C2APQ86WQ0 139 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 CCDC71Q8IV32 467 aaPredicted RBP4.26□□□□□ -1.73
UPF3B-203ENST00000478840 METTL4Q8N3J2 472 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 SPEM1Q8N4L4 309 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 OR4F17Q8NGA8 305 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 OR2T6Q8NHC8 308 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 NANPQ8TBE9 248 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 UPRTQ96BW1 309 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 AGAP4Q96P64 663 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 OR4F4Q96R69 305 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 SLC30A2Q9BRI3 323 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 FEM1AQ9BSK4 669 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 TBC1D10AQ9BXI6 508 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 DHX33Q9H6R0 707 aaKnown RBP4.26□□□□□ -1.73
UPF3B-203ENST00000478840 MOB1AQ9H8S9 216 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 LRRC40Q9H9A6 602 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 GPN2Q9H9Y4 310 aaPredicted RBP4.26□□□□□ -1.73
UPF3B-203ENST00000478840 DCAF13Q9NV06 445 aaKnown RBP4.26□□□□□ -1.73
UPF3B-203ENST00000478840 C1orf123Q9NWV4 160 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 DUS2Q9NX74 493 aaKnown RBP4.26□□□□□ -1.73
UPF3B-203ENST00000478840 C6orf203Q9P0P8 240 aaPredicted RBP4.26□□□□□ -1.73
UPF3B-203ENST00000478840 THAP10Q9P2Z0 257 aaPredicted RBP4.26□□□□□ -1.73
UPF3B-203ENST00000478840 RARRES3Q9UL19 164 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 SPATA2Q9UM82 520 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 GAB2Q9UQC2 676 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 OR10H1Q9Y4A9 318 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 ATP10DQ9P241 1426 aa4.26□□□□□ -1.73
UPF3B-203ENST00000478840 ESYT2A0FGR8 921 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 GSAPA4D1B5 854 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.25□□□□□ -1.73
UPF3B-203ENST00000478840 ZNF749O43361 778 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 PDE5AO76074 875 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 UGT2B4P06133 528 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 OR9G9P0C7N8 305 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 CFC1BP0CG36 223 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 CFC1P0CG37 223 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 CPN1P15169 458 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 RAG2P55895 527 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 HAND2P61296 217 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 CSTF1Q05048 431 aaKnown RBP4.25□□□□□ -1.73
UPF3B-203ENST00000478840 TMEM187Q14656 261 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 FASTKD3Q14CZ7 662 aaKnown RBP4.25□□□□□ -1.73
UPF3B-203ENST00000478840 ZFP69Q49AA0 526 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 PYHIN1Q6K0P9 492 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 LRRC70Q7Z2Q7 622 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 PRSS33Q8NF86 280 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 SSC4DQ8WTU2 575 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 WBP1Q96G27 269 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 AKR1E2Q96JD6 320 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 FAM173AQ9BQD7 235 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 CABLES2Q9BTV7 478 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 GSDMCQ9BYG8 508 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 STRADBQ9C0K7 418 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 MEAF6Q9HAF1 191 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 GALPQ9UBC7 116 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 SEC14L4Q9UDX3 406 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 MRPS33Q9Y291 106 aaKnown RBP4.25□□□□□ -1.73
UPF3B-203ENST00000478840 EXOSC1Q9Y3B2 195 aaKnown RBP4.25□□□□□ -1.73
UPF3B-203ENST00000478840 LRP12Q9Y561 859 aa4.25□□□□□ -1.73
UPF3B-203ENST00000478840 IFITM10A6NMD0 228 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 NTN3O00634 580 aaPredicted RBP4.24□□□□□ -1.73
UPF3B-203ENST00000478840 ZSCAN12O43309 604 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 OR1F1O43749 312 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 NUDT21O43809 227 aaKnown RBP4.24□□□□□ -1.73
UPF3B-203ENST00000478840 DUX1O43812 170 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 NEBLO76041 1014 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 CALML3P27482 149 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 STK19P49842 368 aaPredicted RBP4.24□□□□□ -1.73
UPF3B-203ENST00000478840 OSTNP61366 133 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 NUCB2P80303 420 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 HYAL1Q12794 435 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 LY6DQ14210 128 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 PDK3Q15120 406 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 CCL14Q16627 93 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 MS4A18Q3C1V0 323 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 KRTAP24-1Q3LI83 254 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 TTC23Q5W5X9 447 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 SEL1L3Q68CR1 1132 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 ZNF841Q6ZN19 808 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 ANKRD37Q7Z713 158 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 PARGQ86W56 976 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 SAMD12Q8N8I0 201 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 EIF1ADQ8N9N8 165 aaKnown RBP4.24□□□□□ -1.73
UPF3B-203ENST00000478840 PNPT1Q8TCS8 783 aaKnown RBP4.24□□□□□ -1.73
UPF3B-203ENST00000478840 GTF3AQ92664 365 aaKnown RBP4.24□□□□□ -1.73
UPF3B-203ENST00000478840 TAF15Q92804 592 aaKnown RBP eCLIP4.24□□□□□ -1.73
UPF3B-203ENST00000478840 EMG1Q92979 244 aaKnown RBP4.24□□□□□ -1.73
UPF3B-203ENST00000478840 ART4Q93070 314 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 NTNG2Q96CW9 530 aa4.24□□□□□ -1.73
UPF3B-203ENST00000478840 SLC41A3Q96GZ6 507 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms