RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 STAB1Q9NY15 2570 aa10.98□□□□□ -0.65
SQSTM1-206ENST00000466342 HRKO00198 91 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 SCAMP2O15127 329 aaKnown RBP10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 NME2P1O60361 137 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 EDF1O60869 148 aaKnown RBP10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 SLC25A12O75746 678 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 ZFAND5O76080 213 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 LY6G6DO95868 133 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 ALDOCP09972 364 aaKnown RBP10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 CT62P0C5K7 136 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 DDX5P17844 614 aaKnown RBP10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 PRPS1L1P21108 318 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 NME2P22392 152 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 NTSP30990 170 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 HOXC12P31275 282 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 MPIP34949 423 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 ST13P50502 369 aaKnown RBP10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 DIO3P55073 304 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 CLDN8P56748 225 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 C21orf58P58505 322 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 HSF1Q00613 529 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 GUCY1A3Q02108 690 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 MAP4K2Q12851 820 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 LTB4RQ15722 352 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 ANKRD26P1Q6NSI1 321 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 EPGNQ6UW88 154 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 SPATA19Q7Z5L4 167 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF227Q86WZ6 799 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 SIAH3Q8IW03 269 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 CCDC116Q8IYX3 515 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 FAM9CQ8IZT9 166 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 VWA5B2Q8N398 1253 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 OR8K3Q8NH51 312 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF675Q8TD23 568 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 ACTRT2Q8TDY3 377 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 DOK4Q8TEW6 326 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 FRMD6Q96NE9 622 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 BBS4Q96RK4 519 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 BRINP2Q9C0B6 783 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 CCDC134Q9H6E4 229 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.97□□□□□ -0.651e-6■■□□□ 13.2
SQSTM1-206ENST00000466342 AIG1Q9NVV5 245 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 MAT2BQ9NZL9 334 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 SH3BP4Q9P0V3 963 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 ATP6V1HQ9UI12 483 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 MAPRE3Q9UPY8 281 aa10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 YARS2Q9Y2Z4 477 aaKnown RBP10.97□□□□□ -0.65
SQSTM1-206ENST00000466342 MYO1GB0I1T2 1018 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 KLRC4-KLRK1H3BQV0 150 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 PDPK1O15530 556 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 PRKNO60260 465 aaPredicted RBP10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 ITGA10O75578 1167 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 CLPSP04118 112 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 PCSK2P16519 638 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 PTGER1P34995 402 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 MDH1P40925 334 aaKnown RBP10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 FRKP42685 505 aaPredicted RBP10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 NCBP2P52298 156 aaKnown RBP eCLIP10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 SLC37A1P57057 533 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 RNF4P78317 190 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 MGAT2Q10469 447 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 FUT7Q11130 342 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 MPEG1Q2M385 716 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 LSM12Q3MHD2 195 aaKnown RBP10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF385BQ569K4 471 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF628Q5EBL2 1059 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 NXNQ6DKJ4 435 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 FAM111BQ6SJ93 734 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 HSDL2Q6YN16 418 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 RNF111Q6ZNA4 994 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 ACAD11Q709F0 780 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 FGD2Q7Z6J4 655 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 RIMKLAQ8IXN7 391 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 MARVELD2Q8N4S9 558 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 TMEM156Q8N614 296 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 POGLUT1Q8NBL1 392 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 ADCY4Q8NFM4 1077 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 OR7G1Q8NGA0 311 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 OR9A2Q8NGT5 310 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 CEP70Q8NHQ1 597 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 RND1Q92730 232 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 CTHRC1Q96CG8 243 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 OR52B2Q96RD2 323 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 GPATCH1Q9BRR8 931 aaKnown RBP10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 DPY30Q9C005 99 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 CLEC4MQ9H2X3 399 aaPredicted RBP10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 RASSF1Q9NS23 344 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 ZNF639Q9UID6 485 aa10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 KLF13Q9Y2Y9 288 aaPredicted RBP10.96□□□□□ -0.65
SQSTM1-206ENST00000466342 MXRA5Q9NR99 2828 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 ATRQ13535 2644 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 OR6C76A6NM76 312 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 ANKRD28O15084 1053 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 SLITRK5O94991 958 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 S1PR1P21453 382 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 PCSK6P29122 969 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 SSTR4P31391 388 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 SOX18P35713 384 aa10.95□□□□□ -0.66
SQSTM1-206ENST00000466342 IDH3AP50213 366 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms