RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 NACC2Q96BF6 587 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 CCDC120Q96HB5 630 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 LMLNQ96KR4 655 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 TREX2Q9BQ50 279 aaPredicted RBP6.87□□□□□ -1.31
USP48-206ENST00000464577 AIFM2Q9BRQ8 373 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 SPATA5L1Q9BVQ7 753 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 MRPL9Q9BYD2 267 aaKnown RBP6.87□□□□□ -1.31
USP48-206ENST00000464577 ABCG5Q9H222 651 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 OSGEPL1Q9H4B0 414 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 ZDHHC6Q9H6R6 413 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 TBC1D17Q9HA65 648 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 LIN7BQ9HAP6 207 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 BCL2L10Q9HD36 194 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 ENAMQ9NRM1 1142 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 ZNF275Q9NSD4 429 aaPredicted RBP6.87□□□□□ -1.31
USP48-206ENST00000464577 MARK1Q9P0L2 795 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 UBQLN2Q9UHD9 624 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 ZNF222Q9UK12 451 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 LSM7Q9UK45 103 aaKnown RBP6.87□□□□□ -1.31
USP48-206ENST00000464577 FKBP7Q9Y680 259 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 COL4A6Q14031 1691 aa6.87□□□□□ -1.31
USP48-206ENST00000464577 WASH3PC4AMC7 463 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 AGRPO00253 132 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 CASC3O15234 703 aaKnown RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 B4GALT2O60909 372 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 ABLIM3O94929 683 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 RRASP10301 218 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 RPL17P18621 184 aaKnown RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 CD53P19397 219 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 CELP19835 753 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 NPR2P20594 1047 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 PPP2R1BP30154 601 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 ACSL1P33121 698 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 CTSOP43234 321 aaPredicted RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 PITPNBP48739 271 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 GATMP50440 423 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 RNF144AP50876 292 aaPredicted RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 CTSCP53634 463 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 PCBP4P57723 403 aaKnown RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 SNTA1Q13424 505 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 SUZ12Q15022 739 aaKnown RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 MLC1Q15049 377 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 C9orf131Q5VYM1 1079 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 PYHIN1Q6K0P9 492 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 BRAT1Q6PJG6 821 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 ZNF322Q6U7Q0 402 aaPredicted RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 KCTD20Q7Z5Y7 419 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 COMTD1Q86VU5 262 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 GJD3Q8N144 294 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 ESX1Q8N693 406 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 PCSK9Q8NBP7 692 aaKnown RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 OR11H4Q8NGC9 324 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 OR8D4Q8NGM9 314 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 LHFPL5Q8TAF8 219 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 OTUB1Q96FW1 271 aaPredicted RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 ZSWIM3Q96MP5 696 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 CAMK1GQ96NX5 476 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 SLC22A12Q96S37 553 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 SECISBP2Q96T21 854 aaKnown RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 C7orf50Q9BRJ6 194 aaKnown RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 SMG9Q9H0W8 520 aaKnown RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 CLEC4MQ9H2X3 399 aaPredicted RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 SERHL2Q9H4I8 314 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 EGLN3Q9H6Z9 239 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 ACSS1Q9NUB1 689 aaPredicted RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 IMP3Q9NV31 184 aaKnown RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 EMC3Q9P0I2 261 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 HCSTQ9UBK5 93 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 FAM8A1Q9UBU6 413 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 CLEC4EQ9ULY5 219 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 ITM2BQ9Y287 266 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 DNMT3AQ9Y6K1 912 aaPredicted RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 PCM1Q15154 2024 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 TEX13CA0A0J9YWL9 993 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 PRAMEF27A3QJZ7 478 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 CD8B2A6NJW9 211 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 TRIM77I1YAP6 450 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 HOXA2O43364 376 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 RNF13O43567 381 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 LANCL1O43813 399 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 CELF2O95319 508 aaKnown RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 SULT1A3P0DMM9 295 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 SULT1A4P0DMN0 295 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 TFPIP10646 304 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 CD8BP10966 210 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 ACP5P13686 325 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 UGT2B7P16662 529 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 HTR1FP30939 366 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 THBS2P35442 1172 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 SRP54P61011 504 aaKnown RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 EXOSC2Q13868 293 aaKnown RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 POU4F3Q15319 338 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 CCDC85BQ15834 202 aaPredicted RBP6.86□□□□□ -1.31
USP48-206ENST00000464577 IDNKQ5T6J7 187 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 FAM122CQ6P4D5 195 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 SMARCD3Q6STE5 483 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 GDPD4Q6W3E5 623 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 ASB18Q6ZVZ8 466 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 HTR3DQ70Z44 454 aa6.86□□□□□ -1.31
USP48-206ENST00000464577 GET4Q7L5D6 327 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms